Gene family  

Sub-families
ORTHO003965 (28 genes in 23 species)
ORTHO012039 (16 genes in 16 species)
ORTHO030842 (4 genes in 1 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (3 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (11 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (5 genes)



The gene family HOM002023 has 61 genes in 25 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 61 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G03170 aly name=fgenesh2_kg.6__300__AT5G03880.1;pid=487166;prot=eq;tid=487166 - scaffold_6 No
AL6G32220 aly name=scaffold_603334.1;pid=911277;prot=eq;tid=942790 - scaffold_6 No
AT4G10000 ath Thioredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin (InterPro:IPR002109), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Glutathione S-transferase, N-terminal (InterPro:IPR004045); BEST Arabidopsis thaliana protein match is: Thioredoxin family protein (TAIR:AT5G03880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Thioredoxin family protein transcript=eq;prot=eq; - 4 No
AT5G03880 ath Thioredoxin family protein; FUNCTIONS IN: electron carrier activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin active site (InterPro:IPR011767), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin family protein (TAIR:AT4G10000.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Thioredoxin family protein transcript=eq;prot=eq; - 5 No
BD3G42820 bdi protein disulfide oxidoreductase activity (Blast2GO) pid=Bradi3g42820.1;tid=Bradi3g42820.1;GeneName=Bradi3g42820;transcript=eq;prot=eq + Bd3 No
BD5G11290 bdi pid=Bradi5g11290.1;tid=Bradi5g11290.1;GeneName=Bradi5g11290;transcript=eq;prot=eq - Bd5 No
CP00005G00140 cpa name=evm.TU.supercontig_5.14;pid=evm.TU.supercontig_5.14;prot=eq;transcript=eq - supercontig_5 No
CP00021G00570 cpa name=evm.TU.supercontig_21.57;pid=evm.TU.supercontig_21.57;prot=eq;transcript=eq - supercontig_21 Yes
CR06G02710 cre name=pasa_Sanger_mRNA27717;pid=400716;prot=eq;tid=418194;transcript=eq - chromosome_6 No
FV5G24870 fve Prostaglandin E synthase 2 (mPGES-2) (probable) transcript=eq;prot=eq;pid=gene27078 + LG5 No
FV6G18070 fve Glutathione S-transferase 3 (probable) transcript=eq;prot=eq;pid=gene30308 - LG6 No
GM00G00445 gma 84 pid=16242798;transcript=eq;prot=eq;name=Glyma0084s00210.1 - scaffold_84 No
GM04G43520 gma 04 pid=16257773;transcript=eq;prot=eq;name=Glyma04g43520.1 - Gm04 No
GM13G22160 gma 13 pid=16291156;transcript=eq;prot=eq;name=Glyma13g22160.1 + Gm13 No
LJ0G125400 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_039413;name=LjSGA_039413.1 - LjSGA_039413 No
LJ3G019530 lja partial;prot=eq;transcript=eq;scaffold=CM0129;name=chr3.CM0129.250.nd - chr3 No
MD00G142790 mdo transcript=eq;prot=eq;pid=MDP0000179831;tid=MDP0000179831;contig=MDC006120.166 + MDC006120.166 No
MD00G176090 mdo transcript=eq;prot=eq;pid=MDP0000329761;tid=MDP0000329761;contig=MDC007543.476 + MDC007543.476 No
MD14G001480 mdo transcript=eq;prot=eq;pid=MDP0000132348;tid=MDP0000132348;contig=MDC021646.383 + 14 No
MD15G031790 mdo transcript=eq;prot=eq;pid=MDP0000398446;tid=MDP0000398446;contig=MDC011137.213 - 15 No
<< previous
1 | 2 | 3 | 4 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier