Gene family  

Sub-families
ORTHO001354 (39 genes in 20 species)
ORTHO021539 (5 genes in 5 species)
ORTHO024192 (5 genes in 5 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (3 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (3 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (4 genes)



The gene family HOM002003 has 62 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 62 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G26630 aly name=fgenesh2_kg.3__2592__AT3G23760.1;pid=479891;prot=eq;tid=479891 - scaffold_3 No
AL7G30430 aly name=fgenesh2_kg.7__2935__AT4G14100.1;pid=493502;prot=eq;tid=493502 - scaffold_7 No
AT3G23760 ath FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT4G14100.1); Has 108 Blast hits to 104 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). transcript=eq;prot=eq; - 3 No
AT4G14100 ath transferases, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;transferases, transferring glycosyl groups transcript=eq;prot=eq; + 4 No
BD1G01620 bdi pid=Bradi1g01620.1;tid=Bradi1g01620.1;GeneName=Bradi1g01620;transcript=eq;prot=eq + Bd1 No
BD1G28140 bdi pid=Bradi1g28140.1;tid=Bradi1g28140.1;GeneName=Bradi1g28140;transcript=eq;prot=eq - Bd1 No
BD1G54920 bdi pid=Bradi1g54920.1;tid=Bradi1g54920.1;GeneName=Bradi1g54920;transcript=eq;prot=eq - Bd1 No
CP00013G01730 cpa name=evm.TU.supercontig_13.173;pid=evm.TU.supercontig_13.173;prot=eq;transcript=eq - supercontig_13 No
CP00013G01770 cpa name=evm.TU.supercontig_13.177;pid=evm.TU.supercontig_13.177;prot=eq;transcript=eq + supercontig_13 No
FV0G14270 fve Uncharacterized protein At4g14100, Precursor (similar to) transcript=eq;prot=eq;pid=gene07322 - scf0513160 No
FV4G10240 fve Uncharacterized protein At4g14100, Precursor (similar to) transcript=eq;prot=eq;pid=gene27370 - LG4 No
FV5G32760 fve Uncharacterized protein At4g14100, Precursor (similar to) transcript=eq;prot=eq;pid=gene33414 - LG5 No
GM04G37960 gma 04 pid=16257108;transcript=eq;prot=eq;name=Glyma04g37960.1 - Gm04 No
GM05G33380 gma 05 pid=16260530;transcript=eq;prot=eq;name=Glyma05g33380.1 + Gm05 No
GM06G17100 gma 06 pid=16263243;transcript=eq;prot=eq;name=Glyma06g17100.1 + Gm06 No
LJ1G016580 lja prot=eq;transcript=eq;scaffold=CM0094;name=chr1.CM0094.480.nd + chr1 No
LJ4G031040 lja prot=eq;transcript=eq;scaffold=CM0175;name=chr4.CM0175.180.nd + chr4 No
MD00G231410 mdo transcript=eq;prot=eq;pid=MDP0000191179;tid=MDP0000191179;contig=MDC010042.222 + MDC010042.222 No
MD00G236480 mdo transcript=eq;prot=eq;pid=MDP0000826995;tid=MDP0000826995;contig=MDC010255.138 + MDC010255.138 No
MD00G468960 mdo transcript=eq;prot=eq;pid=MDP0000763453;tid=MDP0000763453;contig=MDC021775.76 - MDC021775.76 No
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