Gene family  

Sub-families
ORTHO011239 (17 genes in 12 species)
ORTHO013715 (13 genes in 11 species)
ORTHO017802 (7 genes in 6 species)
View all sub-families (8)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (4 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (3 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (3 genes)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (6 genes)



The gene family HOM002002 has 62 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 62 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G46500 aly name=fgenesh2_kg.1__4246__AT1G51745.2;pid=474292;prot=eq;tid=474292 + scaffold_1 No
AT1G51745 ath Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT3G21295.1); Has 543 Blast hits to 394 proteins in 123 species: Archae - 0; Bacteria - 201; Metazoa - 137; Fungi - 38; Plants - 92; Viruses - 3; Other Eukaryotes - 72 (source: NCBI BLink).;Tudor/PWWP/MBT superfamily protein transcript=eq;prot=eq; + 1 No
AT3G03140 ath Tudor/PWWP/MBT superfamily protein; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT3G21295.1); Has 426 Blast hits to 278 proteins in 85 species: Archae - 0; Bacteria - 14; Metazoa - 209; Fungi - 70; Plants - 86; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).;Tudor/PWWP/MBT superfamily protein transcript=eq;prot=eq; + 3 No
AT3G21295 ath Tudor/PWWP/MBT superfamily protein; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G51745.1); Has 561 Blast hits to 428 proteins in 108 species: Archae - 2; Bacteria - 226; Metazoa - 60; Fungi - 64; Plants - 94; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).;Tudor/PWWP/MBT superfamily protein transcript=eq;prot=eq; + 3 No
BD2G14280 bdi pid=Bradi2g14280.1;tid=Bradi2g14280.1;GeneName=Bradi2g14280;transcript=eq;prot=eq + Bd2 No
BD2G41150 bdi pid=Bradi2g41150.1;tid=Bradi2g41150.1;GeneName=Bradi2g41150;transcript=eq;prot=eq + Bd2 No
BD3G52480 bdi pid=Bradi3g52480.1;tid=Bradi3g52480.1;GeneName=Bradi3g52480;transcript=eq;prot=eq - Bd3 No
BD5G20390 bdi nuclear hormone receptor binding (Blast2GO) pid=Bradi5g20390.1;tid=Bradi5g20390.1;GeneName=Bradi5g20390;transcript=eq;prot=eq - Bd5 No
CP00039G00520 cpa name=evm.TU.supercontig_39.52;pid=evm.TU.supercontig_39.52;prot=eq;transcript=eq + supercontig_39 No
CP00039G00530 cpa name=evm.TU.supercontig_39.53;pid=evm.TU.supercontig_39.53;prot=eq;transcript=eq + supercontig_39 No
CP00131G00280 cpa name=evm.TU.supercontig_131.28;pid=evm.TU.supercontig_131.28;prot=eq;transcript=eq - supercontig_131 No
CP00131G00290 cpa name=evm.TU.supercontig_131.29;pid=evm.TU.supercontig_131.29;prot=eq;transcript=eq - supercontig_131 No
FV4G21270 fve hypothetical protein transcript=eq;prot=eq;pid=gene23118 + LG4 No
FV7G34180 fve hypothetical protein transcript=eq;prot=eq;pid=gene12612 + LG7 No
GM01G43970 gma 01 pid=16246238;transcript=eq;prot=eq;name=Glyma01g43970.1 - Gm01 No
GM07G01530 gma 07 pid=16265791;transcript=eq;prot=eq;name=Glyma07g01530.1 + Gm07 No
GM08G20950 gma 08 pid=16271914;transcript=eq;prot=eq;name=Glyma08g20950.1 + Gm08 No
GM11G01440 gma 11 pid=16282300;transcript=eq;prot=eq;name=Glyma11g01440.1 - Gm11 No
GM11G09840 gma 11 pid=16283299;transcript=eq;prot=eq;name=Glyma11g09840.1 - Gm11 No
GM12G02150 gma 12 pid=16286069;transcript=eq;prot=eq;name=Glyma12g02150.1 - Gm12 No
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