Gene family  

Sub-families
ORTHO003841 (28 genes in 20 species)
ORTHO007127 (23 genes in 22 species)
ORTHO055962 (2 genes in 1 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (6 genes)



The gene family HOM001986 has 62 genes in 24 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 62 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G42320 aly name=fgenesh1_pg.C_scaffold_1003551;pid=336986;prot=eq;tid=336986 + scaffold_1 No
AL3G19620 aly name=fgenesh2_kg.3__2009__AT3G18160.1;pid=479308;prot=eq;tid=479308 + scaffold_3 No
AL3G19630 aly name=fgenesh2_kg.3__2010__AT3G18165.1;pid=479309;prot=eq;tid=479309 + scaffold_3 No
AT1G48635 ath peroxin 3 (PEX3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome organization; LOCATED IN: mitochondrion, peroxisome, integral to peroxisomal membrane; CONTAINS InterPro DOMAIN/s: Peroxin-3 (InterPro:IPR006966); BEST Arabidopsis thaliana protein match is: peroxin 3-1 (TAIR:AT3G18160.1); Has 293 Blast hits to 293 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 111; Plants - 49; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).;peroxin 3 transcript=eq;prot=eq; + 1 No
AT3G18160 ath peroxin 3-1 (PEX3-1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome organization; LOCATED IN: peroxisome, integral to peroxisomal membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxin-3 (InterPro:IPR006966); BEST Arabidopsis thaliana protein match is: peroxin 3 (TAIR:AT1G48635.1); Has 308 Blast hits to 308 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 121; Plants - 49; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).;peroxin 3-1 transcript=eq;prot=eq; + 3 No
AT3G18165 ath Encodes MOS4 (Modifier of snc1, 4), a nuclear protein homologous to human Breast Cancer-Amplified Sequence (BCAS2). MOS4 interacts with AtCDC5 and PRL1. All three proteins are essential for plant innate immunity.;modifier of snc1,4 transcript=eq;prot=eq; + 3 No
BD1G77830 bdi pid=Bradi1g77830.1;tid=Bradi1g77830.1;GeneName=Bradi1g77830;transcript=eq;prot=eq - Bd1 No
BD2G09770 bdi pid=Bradi2g09770.2;tid=Bradi2g09770.2;GeneName=Bradi2g09770;transcript=eq;prot=eq + Bd2 No
CP00003G04220 cpa name=evm.TU.supercontig_3.422;pid=evm.TU.supercontig_3.422;prot=eq;transcript=eq - supercontig_3 No
CR17G00290 cre name=au.g6996_t1;pid=288860;prot=eq;tid=288867;transcript=eq + chromosome_17 No
FV5G17000 fve Peroxisomal biogenesis factor 3 (probable) transcript=eq;prot=eq;pid=gene09414 + LG5 No
FV5G17020 fve Pre-mRNA-splicing factor SPF27 (probable) transcript=eq;prot=eq;pid=gene09416 + LG5 No
GM05G34080 gma 05 pid=16260621;transcript=eq;prot=eq;name=Glyma05g34080.1 + Gm05 No
GM05G34090 gma 05 pid=16260622;transcript=eq;prot=eq;name=Glyma05g34090.1 + Gm05 No
GM08G05590 gma 08 pid=16270087;transcript=eq;prot=eq;name=Glyma08g05590.1 - Gm08 No
GM08G05600 gma 08 pid=16270091;transcript=eq;prot=eq;name=Glyma08g05600.1 - Gm08 No
LJ4G036750 lja prot=eq;transcript=eq;scaffold=CM0042;name=chr4.CM0042.2070.nc - chr4 No
LJ4G036760 lja prot=eq;transcript=eq;scaffold=CM0042;name=chr4.CM0042.2080.nc - chr4 No
MD00G261130 mdo transcript=eq;prot=eq;pid=MDP0000126108;tid=MDP0000126108;contig=MDC011193.361 + MDC011193.361 No
MD00G261170 mdo transcript=eq;prot=eq;pid=MDP0000240735;tid=MDP0000240735;contig=MDC011193.509 + MDC011193.509 No
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