Gene family  

Sub-families
ORTHO005150 (26 genes in 21 species)
ORTHO010733 (18 genes in 18 species)
ORTHO031311 (3 genes in 3 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (3 genes)
fve
Fragaria vesca (6 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family HOM001958 has 63 genes in 22 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 63 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G29240 aly name=fgenesh2_kg.1__2964__AT1G28090.1;pid=473010;prot=eq;tid=473010 + scaffold_1 No
AL3G38370 aly name=scaffold_304076.1;pid=900106;prot=eq;tid=931619 + scaffold_3 No
AL5G17780 aly name=Al_scaffold_0005_1702;pid=866223;prot=eq;tid=897736 + scaffold_5 No
AL6G23490 aly name=fgenesh2_kg.6__2364__AT5G23690.1;pid=489230;prot=eq;tid=489230 + scaffold_6 No
AT1G28090 ath Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 9340 Blast hits to 9332 proteins in 2600 species: Archae - 2; Bacteria - 6572; Metazoa - 129; Fungi - 227; Plants - 128; Viruses - 8; Other Eukaryotes - 2274 (source: NCBI BLink).;Polynucleotide adenylyltransferase family protein transcript=eq;prot=eq; + 1 No
AT2G17580 ath Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT1G28090.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Polynucleotide adenylyltransferase family protein transcript=eq;prot=eq; + 2 No
AT3G48830 ath polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: polynucleotide adenylyltransferase activity, RNA binding, nucleotide binding, nucleic acid binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Poly A polymerase, head domain (InterPro:IPR002646), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 11594 Blast hits to 10901 proteins in 2648 species: Archae - 2; Bacteria - 6462; Metazoa - 1299; Fungi - 748; Plants - 674; Viruses - 8; Other Eukaryotes - 2401 (source: NCBI BLink).;polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein transcript=eq;prot=eq; + 3 No
AT5G23690 ath Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G48830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Polynucleotide adenylyltransferase family protein transcript=eq;prot=eq; + 5 No
BD1G76307 bdi pid=Bradi1g76307.1;tid=Bradi1g76307.1;GeneName=Bradi1g76307;transcript=eq;prot=eq - Bd1 No
BD5G08637 bdi pid=Bradi5g08637.1;tid=Bradi5g08637.1;GeneName=Bradi5g08637;transcript=eq;prot=eq + Bd5 No
CP00055G01870 cpa name=evm.TU.supercontig_55.187;pid=evm.TU.supercontig_55.187;prot=eq;transcript=eq - supercontig_55 Yes
CP01414G00030 cpa name=evm.TU.supercontig_1414.3;pid=evm.TU.supercontig_1414.3;prot=eq;transcript=eq - supercontig_1414 No
CP02731G00010 cpa name=evm.TU.supercontig_2731.1;pid=evm.TU.supercontig_2731.1;prot=eq;transcript=eq - supercontig_2731 No
FV0G09100 fve ATP-dependent helicase/deoxyribonuclease subunit B (probable) transcript=eq;prot=eq;pid=gene06437 - scf0513158 No
FV0G09200 fve Poly(A) polymerase (PAP) (probable) transcript=eq;prot=eq;pid=gene06447 - scf0513158 No
FV1G00960 fve Ras guanine nucleotide exchange factor B (probable) transcript=eq;prot=eq;pid=gene02105 + LG1 Yes
FV1G02980 fve Chromatin assembly factor 1 subunit A (CAF-1 subunit A) (probable) transcript=eq;prot=eq;pid=gene10179 - LG1 Yes
FV1G12320 fve Probable poly(A) polymerase (PAP) transcript=eq;prot=eq;pid=gene13060 + LG1 No
FV1G12340 fve Stress response protein NST1 (probable) transcript=eq;prot=eq;pid=gene13062 + LG1 No
GM01G36420 gma 01 pid=16245357;transcript=eq;prot=eq;name=Glyma01g36420.1 + Gm01 No
<< previous
1 | 2 | 3 | 4 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier