Gene family  

Sub-families
ORTHO004463 (27 genes in 25 species)
ORTHO008976 (21 genes in 18 species)
ORTHO067310 (2 genes in 2 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family HOM001954 has 63 genes in 25 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 63 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G35620 aly name=scaffold_403718.1;pid=904217;prot=eq;tid=935730 + scaffold_4 No
AL8G34300 aly name=scaffold_803492.1;pid=920092;prot=eq;tid=951605 - scaffold_8 No
AT2G47420 ath Ribosomal RNA adenine dimethylase family protein; FUNCTIONS IN: rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA (adenine) methyltransferase activity; INVOLVED IN: rRNA modification, rRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine dimethylase (InterPro:IPR011530), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2); Has 9871 Blast hits to 9860 proteins in 3038 species: Archae - 214; Bacteria - 6519; Metazoa - 271; Fungi - 146; Plants - 120; Viruses - 0; Other Eukaryotes - 2601 (source: NCBI BLink).;Ribosomal RNA adenine dimethylase family protein transcript=eq;prot=eq; + 2 No
AT5G66360 ath Ribosomal RNA adenine dimethylase family protein; FUNCTIONS IN: rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA (adenine) methyltransferase activity; INVOLVED IN: rRNA modification, rRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine dimethylase (InterPro:IPR011530), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT2G47420.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Ribosomal RNA adenine dimethylase family protein transcript=eq;prot=eq; + 5 No
BD1G26550 bdi rRNA (adenine-N6,N6-)-dimethyltransferase activity (Blast2GO) pid=Bradi1g26550.1;tid=Bradi1g26550.1;GeneName=Bradi1g26550;transcript=eq;prot=eq - Bd1 No
BD3G15000 bdi rRNA (adenine-N6,N6-)-dimethyltransferase activity (Blast2GO) pid=Bradi3g15000.1;tid=Bradi3g15000.1;GeneName=Bradi3g15000;transcript=eq;prot=eq - Bd3 No
BD3G51000 bdi rRNA (adenine-N6,N6-)-dimethyltransferase activity (Blast2GO) pid=Bradi3g51000.1;tid=Bradi3g51000.1;GeneName=Bradi3g51000;transcript=eq;prot=eq - Bd3 No
BD5G24130 bdi pid=Bradi5g24130.1;tid=Bradi5g24130.1;GeneName=Bradi5g24130;transcript=eq;prot=eq - Bd5 No
CP00026G02130 cpa name=evm.TU.supercontig_26.213;pid=evm.TU.supercontig_26.213;prot=eq;transcript=eq + supercontig_26 No
CP00217G00200 cpa name=evm.TU.supercontig_217.20;pid=evm.TU.supercontig_217.20;prot=eq;transcript=eq - supercontig_217 No
CR01G08910 cre name=OVA_OVA_Chlre2_kg.scaffold_1000589;pid=206075;prot=eq;tid=206080;transcript=eq + chromosome_1 No
FV1G14310 fve Probable dimethyladenosine transferase transcript=eq;prot=eq;pid=gene14905 - LG1 No
FV5G34890 fve Probable dimethyladenosine transferase (putative) transcript=eq;prot=eq;pid=gene02302 + LG5 No
GM01G37520 gma 01 pid=16245488;transcript=eq;prot=eq;name=Glyma01g37520.1 - Gm01 No
GM06G47390 gma 06 pid=16265478;transcript=eq;prot=eq;name=Glyma06g47390.1 - Gm06 No
GM11G07770 gma 11 pid=16283049;transcript=eq;prot=eq;name=Glyma11g07770.1 + Gm11 No
GM13G18570 gma 13 pid=16290735;transcript=eq;prot=eq;name=Glyma13g18570.1 - Gm13 No
LJ0G154750 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_048522;name=LjSGA_048522.1 + LjSGA_048522 No
LJ2G023030 lja prot=eq;transcript=eq;scaffold=CM0249;name=chr2.CM0249.440.nc - chr2 No
MD00G068670 mdo transcript=eq;prot=eq;pid=MDP0000168652;tid=MDP0000168652;contig=MDC002864.416 - MDC002864.416 No
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