Gene family  

Sub-families
ORTHO040786 (3 genes in 1 species)
ORTHO041401 (2 genes in 1 species)
ORTHO043282 (2 genes in 2 species)
View all sub-families (9)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (13 genes)
ath
Arabidopsis thaliana (11 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (7 genes)
gma
Glycine max (5 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (3 genes)
mtr
Medicago truncatula (4 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
tca
Theobroma cacao (8 genes)



The gene family HOM001951 has 63 genes in 12 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 63 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G08010 aly name=scaffold_37500001.1;pid=920585;prot=eq;tid=952098 - scaffold_375 No
AL2G08270 aly name=scaffold_200832.1;pid=893758;prot=eq;tid=925271 + scaffold_2 No
AL3G20300 aly name=scaffold_302215.1;pid=898245;prot=eq;tid=929758 - scaffold_3 No
AL4G32530 aly name=fgenesh1_pg.C_scaffold_4002625;pid=346283;prot=eq;tid=346283 + scaffold_4 No
AL5G26740 aly name=fgenesh2_kg.5__2081__AT3G56470.1;pid=486089;prot=eq;tid=486089 + scaffold_5 No
AL6G32390 aly name=fgenesh2_kg.6__2988__AT4G10660.1;pid=489854;prot=eq;tid=489854 - scaffold_6 No
AL6G33110 aly name=scaffold_603430.1;pid=911373;prot=eq;tid=942886 + scaffold_6 No
AL6G33120 aly name=scaffold_603431.1;pid=911374;prot=eq;tid=942887 + scaffold_6 No
AL6G33140 aly name=fgenesh2_kg.6__3048__AT4G10695.1;pid=489914;prot=eq;tid=489914 - scaffold_6 No
AL6G35630 aly name=fgenesh2_kg.6__3175__AT4G12370.1;pid=490041;prot=eq;tid=490041 + scaffold_6 No
AL6G35640 aly name=Al_scaffold_0006_3449;pid=863940;prot=eq;tid=895453 + scaffold_6 No
AL7G29500 aly name=scaffold_703128.1;pid=915386;prot=eq;tid=946899 + scaffold_7 No
AL7G29510 aly name=Al_scaffold_0007_2852;pid=859353;prot=eq;tid=890866 + scaffold_7 No
AT1G49360 ath F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G57790.1); Has 351 Blast hits to 349 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 351; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; - 1 No
AT1G57790 ath F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G56470.1); Has 543 Blast hits to 532 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 541; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; - 1 No
AT2G44735 ath BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G18720.1); Has 82 Blast hits to 82 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 2 No
AT3G18720 ath F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G56470.1); Has 303 Blast hits to 299 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 303; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; - 3 No
AT3G56470 ath F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G57790.1); Has 460 Blast hits to 453 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 460; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; + 3 No
AT4G00893 ath unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12370.1); Has 220 Blast hits to 215 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 4 No
AT4G10660 ath CDC68-related; BEST Arabidopsis thaliana protein match is: CDC68-related (TAIR:AT4G10695.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;CDC68-related transcript=eq;prot=eq; + 4 No
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