Gene family  

Sub-families
ORTHO002117 (33 genes in 24 species)
ORTHO005508 (25 genes in 18 species)
ORTHO058280 (2 genes in 2 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (5 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (4 genes)



The gene family HOM001950 has 63 genes in 25 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 63 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G17900 aly name=scaffold_101891.1;pid=889097;prot=eq;tid=920610 + scaffold_1 No
AL1G18030 aly name=fgenesh1_pm.C_scaffold_1001463;pid=312683;prot=eq;tid=312683 - scaffold_1 No
AL2G27550 aly name=fgenesh2_kg.2__2148__AT1G78540.1;pid=477018;prot=eq;tid=477018 - scaffold_2 No
AL7G39010 aly name=fgenesh2_kg.7__3481__AT1G17040.1;pid=494048;prot=eq;tid=494048 + scaffold_7 No
AT1G17040 ath Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.;SH2 domain protein A transcript=eq;prot=eq; + 1 No
AT1G17160 ath pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, D-ribose catabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT1G06030.1); Has 24314 Blast hits to 24305 proteins in 2661 species: Archae - 422; Bacteria - 18834; Metazoa - 425; Fungi - 293; Plants - 520; Viruses - 0; Other Eukaryotes - 3820 (source: NCBI BLink).;pfkB-like carbohydrate kinase family protein transcript=eq;prot=eq; + 1 No
AT1G78540 ath Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.;SH2 domain protein B transcript=eq;prot=eq; - 1 No
BD2G45890 bdi adenosine kinase activity (Blast2GO) pid=Bradi2g45890.1;tid=Bradi2g45890.1;GeneName=Bradi2g45890;transcript=eq;prot=eq + Bd2 No
BD3G33820 bdi pid=Bradi3g33820.1;tid=Bradi3g33820.1;GeneName=Bradi3g33820;transcript=eq;prot=eq + Bd3 No
CP00077G00680 cpa name=evm.TU.supercontig_77.68;pid=evm.TU.supercontig_77.68;prot=eq;transcript=eq + supercontig_77 No
CP00077G01110 cpa name=evm.TU.supercontig_77.111;pid=evm.TU.supercontig_77.111;prot=eq;transcript=eq + supercontig_77 No
CR10G01550 cre name=e_gwW.8.230.1;pid=111372;prot=eq;tid=111372;transcript=eq + chromosome_10 No
CR12G09980 cre name=au.g3687_t2;pid=285327;prot=eq;tid=285334;transcript=eq + chromosome_12 Yes
FV3G19780 fve Ribokinase (probable) transcript=eq;prot=eq;pid=gene27367 - LG3 No
FV3G19820 fve LRR receptor-like serine/threonine-protein kinase FEI 1, Precursor (similar to) transcript=eq;prot=eq;pid=gene27137 + LG3 No
GM13G33840 gma 13 pid=16292525;transcript=eq;prot=eq;name=Glyma13g33840.1 + Gm13 No
GM13G33850 gma 13 pid=16292526;transcript=eq;prot=eq;name=Glyma13g33850.1 + Gm13 No
GM15G27760 gma 15 pid=16299877;transcript=eq;prot=eq;name=Glyma15g27760.1 + Gm15 No
GM15G27770 gma 15 pid=16299878;transcript=eq;prot=eq;name=Glyma15g27770.1 + Gm15 No
GM15G38510 gma 15 pid=16300426;transcript=eq;prot=eq;name=Glyma15g38510.1 - Gm15 No
<< previous
1 | 2 | 3 | 4 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier