Gene family 
- Id
- HOM001947
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO001690 (36 genes in 24 species)
ORTHO011975 (16 genes in 15 species)
ORTHO032176 (3 genes in 3 species)
View all sub-families (5)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (3 genes)
- ath
- Arabidopsis thaliana (3 genes)
- bdi
- Brachypodium distachyon (4 genes)
- cpa
- Carica papaya (2 genes)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (2 genes)
- gma
- Glycine max (7 genes)
- lja
- Lotus japonicus (3 genes)
- mdo
- Malus domestica (2 genes)
- mes
- Manihot esculenta (3 genes)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (4 genes)
- osaindica
- Oryza sativa ssp. indica (3 genes)
- ota
- Ostreococcus tauri (1 gene)
- ppa
- Physcomitrella patens (2 genes)
- ptr
- Populus trichocarpa (4 genes)
- rco
- Ricinus communis (4 genes)
- sbi
- Sorghum bicolor (2 genes)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (2 genes)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (4 genes)
- zma
- Zea mays (4 genes)
The gene family HOM001947 has 64 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM001947
Page 1 of 4, showing 20 records out of 64 total, starting on record 1, ending on 20
gene_id | species | description | comment | strand | chr | outlier |
---|---|---|---|---|---|---|
AL4G01190 | aly | name=fgenesh1_pm.C_scaffold_4000096;pid=320039;prot=eq;tid=320039 | + | scaffold_4 | No | |
AL5G05650 | aly | name=fgenesh2_kg.5__464__AT3G26900.2;pid=484472;prot=eq;tid=484472 | - | scaffold_5 | No | |
AL7G01530 | aly | name=fgenesh2_kg.7__165__AT4G39540.2;pid=490732;prot=eq;tid=490732 | + | scaffold_7 | No | |
AT2G21940 | ath | shikimate kinase 1 (SK1); FUNCTIONS IN: shikimate kinase activity, ATP binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase 2 (TAIR:AT4G39540.2); Has 7757 Blast hits to 7757 proteins in 2385 species: Archae - 26; Bacteria - 5408; Metazoa - 44; Fungi - 134; Plants - 162; Viruses - 0; Other Eukaryotes - 1983 (source: NCBI BLink).;shikimate kinase 1 | transcript=eq;prot=eq; | + | 2 | No |
AT3G26900 | ath | shikimate kinase like 1 (SKL1); FUNCTIONS IN: shikimate kinase activity, ATP binding; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase 1 (TAIR:AT2G21940.5); Has 3815 Blast hits to 3815 proteins in 1373 species: Archae - 6; Bacteria - 2903; Metazoa - 33; Fungi - 1; Plants - 140; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink).;shikimate kinase like 1 | transcript=eq;prot=eq; | - | 3 | No |
AT4G39540 | ath | shikimate kinase 2 (SK2); FUNCTIONS IN: shikimate kinase activity, ATP binding; INVOLVED IN: aromatic amino acid family biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase 1 (TAIR:AT2G21940.5).;shikimate kinase 2 | transcript=eq;prot=eq; | + | 4 | No |
BD1G45304 | bdi | pid=Bradi1g45304.2;tid=Bradi1g45304.2;GeneName=Bradi1g45304;transcript=eq;prot=eq | + | Bd1 | No | |
BD2G03680 | bdi | ATP binding (Blast2GO) | pid=Bradi2g03680.1;tid=Bradi2g03680.1;GeneName=Bradi2g03680;transcript=eq;prot=eq | + | Bd2 | No |
BD3G59237 | bdi | pid=Bradi3g59237.3;tid=Bradi3g59237.3;GeneName=Bradi3g59237;transcript=eq;prot=eq | - | Bd3 | No | |
BD5G23460 | bdi | ATP binding (Blast2GO) | pid=Bradi5g23460.1;tid=Bradi5g23460.1;GeneName=Bradi5g23460;transcript=eq;prot=eq | - | Bd5 | No |
CP00070G01020 | cpa | name=evm.TU.supercontig_70.102;pid=evm.TU.supercontig_70.102;prot=eq;transcript=eq | - | supercontig_70 | No | |
CP00191G00040 | cpa | name=evm.TU.supercontig_191.4;pid=evm.TU.supercontig_191.4;prot=eq;transcript=eq | - | supercontig_191 | No | |
CR10G04010 | cre | name=MHS_e_gwW.10.155.1;pid=196593;prot=eq;tid=196598;transcript=eq | - | chromosome_10 | No | |
FV6G01580 | fve | Shikimate kinase, chloroplastic, Precursor (putative) | transcript=eq;prot=eq;pid=gene31604 | - | LG6 | No |
FV6G51520 | fve | Shikimate kinase, chloroplastic, Precursor (probable) | transcript=eq;prot=eq;pid=gene01367 | + | LG6 | No |
GM02G08050 | gma | 02 | pid=16247362;transcript=eq;prot=eq;name=Glyma02g08050.1 | - | Gm02 | No |
GM04G39700 | gma | 04 | pid=16257306;transcript=eq;prot=eq;name=Glyma04g39700.1 | + | Gm04 | No |
GM04G39710 | gma | 04 | pid=16257309;transcript=eq;prot=eq;name=Glyma04g39710.1 | + | Gm04 | No |
GM05G31730 | gma | 05 | pid=16260329;transcript=eq;prot=eq;name=Glyma05g31730.1 | - | Gm05 | No |
GM06G15160 | gma | 06 | pid=16263022;transcript=eq;prot=eq;name=Glyma06g15160.1 | - | Gm06 | No |