Gene family  

Sub-families
ORTHO001690 (36 genes in 24 species)
ORTHO011975 (16 genes in 15 species)
ORTHO032176 (3 genes in 3 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (4 genes)



The gene family HOM001947 has 64 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 64 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G01190 aly name=fgenesh1_pm.C_scaffold_4000096;pid=320039;prot=eq;tid=320039 + scaffold_4 No
AL5G05650 aly name=fgenesh2_kg.5__464__AT3G26900.2;pid=484472;prot=eq;tid=484472 - scaffold_5 No
AL7G01530 aly name=fgenesh2_kg.7__165__AT4G39540.2;pid=490732;prot=eq;tid=490732 + scaffold_7 No
AT2G21940 ath shikimate kinase 1 (SK1); FUNCTIONS IN: shikimate kinase activity, ATP binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase 2 (TAIR:AT4G39540.2); Has 7757 Blast hits to 7757 proteins in 2385 species: Archae - 26; Bacteria - 5408; Metazoa - 44; Fungi - 134; Plants - 162; Viruses - 0; Other Eukaryotes - 1983 (source: NCBI BLink).;shikimate kinase 1 transcript=eq;prot=eq; + 2 No
AT3G26900 ath shikimate kinase like 1 (SKL1); FUNCTIONS IN: shikimate kinase activity, ATP binding; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase 1 (TAIR:AT2G21940.5); Has 3815 Blast hits to 3815 proteins in 1373 species: Archae - 6; Bacteria - 2903; Metazoa - 33; Fungi - 1; Plants - 140; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink).;shikimate kinase like 1 transcript=eq;prot=eq; - 3 No
AT4G39540 ath shikimate kinase 2 (SK2); FUNCTIONS IN: shikimate kinase activity, ATP binding; INVOLVED IN: aromatic amino acid family biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase 1 (TAIR:AT2G21940.5).;shikimate kinase 2 transcript=eq;prot=eq; + 4 No
BD1G45304 bdi pid=Bradi1g45304.2;tid=Bradi1g45304.2;GeneName=Bradi1g45304;transcript=eq;prot=eq + Bd1 No
BD2G03680 bdi ATP binding (Blast2GO) pid=Bradi2g03680.1;tid=Bradi2g03680.1;GeneName=Bradi2g03680;transcript=eq;prot=eq + Bd2 No
BD3G59237 bdi pid=Bradi3g59237.3;tid=Bradi3g59237.3;GeneName=Bradi3g59237;transcript=eq;prot=eq - Bd3 No
BD5G23460 bdi ATP binding (Blast2GO) pid=Bradi5g23460.1;tid=Bradi5g23460.1;GeneName=Bradi5g23460;transcript=eq;prot=eq - Bd5 No
CP00070G01020 cpa name=evm.TU.supercontig_70.102;pid=evm.TU.supercontig_70.102;prot=eq;transcript=eq - supercontig_70 No
CP00191G00040 cpa name=evm.TU.supercontig_191.4;pid=evm.TU.supercontig_191.4;prot=eq;transcript=eq - supercontig_191 No
CR10G04010 cre name=MHS_e_gwW.10.155.1;pid=196593;prot=eq;tid=196598;transcript=eq - chromosome_10 No
FV6G01580 fve Shikimate kinase, chloroplastic, Precursor (putative) transcript=eq;prot=eq;pid=gene31604 - LG6 No
FV6G51520 fve Shikimate kinase, chloroplastic, Precursor (probable) transcript=eq;prot=eq;pid=gene01367 + LG6 No
GM02G08050 gma 02 pid=16247362;transcript=eq;prot=eq;name=Glyma02g08050.1 - Gm02 No
GM04G39700 gma 04 pid=16257306;transcript=eq;prot=eq;name=Glyma04g39700.1 + Gm04 No
GM04G39710 gma 04 pid=16257309;transcript=eq;prot=eq;name=Glyma04g39710.1 + Gm04 No
GM05G31730 gma 05 pid=16260329;transcript=eq;prot=eq;name=Glyma05g31730.1 - Gm05 No
GM06G15160 gma 06 pid=16263022;transcript=eq;prot=eq;name=Glyma06g15160.1 - Gm06 No
<< previous
1 | 2 | 3 | 4 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier