Gene family  

Sub-families
ORTHO004413 (27 genes in 23 species)
ORTHO008233 (22 genes in 19 species)
ORTHO069879 (2 genes in 2 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (5 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (4 genes)



The gene family HOM001926 has 64 genes in 25 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 64 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G40750 aly name=fgenesh2_kg.3__3534__AT2G18990.1;pid=480833;prot=eq;tid=480833 + scaffold_3 No
AL5G03970 aly name=fgenesh2_kg.5__308__AT3G25580.1;pid=484316;prot=eq;tid=484316 + scaffold_5 No
AL5G20600 aly name=fgenesh1_pm.C_scaffold_5001201;pid=323657;prot=eq;tid=323657 - scaffold_5 No
AL8G34260 aly name=fgenesh2_kg.8__2781__AT5G66410.1;pid=496965;prot=eq;tid=496965 - scaffold_8 No
AT2G18990 ath thioredoxin domain-containing protein 9 homolog (TXND9); INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin domain (InterPro:IPR013766); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT3G25580.1); Has 1035 Blast hits to 1035 proteins in 264 species: Archae - 10; Bacteria - 75; Metazoa - 396; Fungi - 154; Plants - 221; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).;thioredoxin domain-containing protein 9 homolog transcript=eq;prot=eq; - 2 No
AT3G25580 ath Thioredoxin superfamily protein; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin domain-containing protein 9 homolog (TAIR:AT2G18990.1); Has 1084 Blast hits to 1084 proteins in 275 species: Archae - 18; Bacteria - 74; Metazoa - 392; Fungi - 176; Plants - 221; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink).;Thioredoxin superfamily protein transcript=eq;prot=eq; + 3 No
AT3G50960 ath Encodes a protein that functions in microtubule assembly. PLP3a can bind to several different tubulin family members in Y2H assays. Plants with reduced levels of both PLP3a and PLP3b (At5g66410) show defects in cytokinesis, cortical microtubule array formation, oriented cell growth, and maintenance of proper ploidy.;phosducin-like protein 3 homolog transcript=eq;prot=eq; - 3 No
AT5G66410 ath Encodes a protein that functions in microtubule assembly. Plants with reduced levels of both PLP3a (At3g50960) and PLP3b show defects in cytokinesis, cortical microtubule array formation, oriented cell growth, and maintenance of proper ploidy.;phosducin-like protein 3 homolog transcript=eq;prot=eq; + 5 No
BD3G19070 bdi ATP binding (Blast2GO) pid=Bradi3g19070.1;tid=Bradi3g19070.1;GeneName=Bradi3g19070;transcript=eq;prot=eq + Bd3 No
BD4G14050 bdi pid=Bradi4g14050.1;tid=Bradi4g14050.1;GeneName=Bradi4g14050;transcript=eq;prot=eq + Bd4 No
CP00006G01660 cpa name=evm.TU.supercontig_6.167;pid=evm.TU.supercontig_6.167;prot=eq;transcript=eq + supercontig_6 No
CP00292G00060 cpa name=evm.TU.supercontig_292.6;pid=evm.TU.supercontig_292.6;prot=eq;transcript=eq - supercontig_292 No
CR01G07810 cre name=estExt_fgenesh2_kg.C_10157;pid=183659;prot=eq;tid=183659;transcript=eq - chromosome_1 No
CR17G04520 cre name=estExt_fgenesh2_pg.C_960003;pid=195234;prot=eq;tid=195234;transcript=eq - chromosome_17 No
FV1G14710 fve Phosducin-like protein 3 (similar to) transcript=eq;prot=eq;pid=gene14945 - LG1 No
FV2G03730 fve Thioredoxin domain-containing protein 9 homolog (similar to) transcript=eq;prot=eq;pid=gene22831 + LG2 No
FV5G24560 fve Phosducin-like protein 3 (similar to) transcript=eq;prot=eq;pid=gene26939 + LG5 No
GM02G05990 gma 02 pid=16247132;transcript=eq;prot=eq;name=Glyma02g05990.1 - Gm02 No
GM10G40590 gma 10 pid=16281647;transcript=eq;prot=eq;name=Glyma10g40590.1 + Gm10 No
GM14G40370 gma 14 pid=16297049;transcript=eq;prot=eq;name=Glyma14g40370.1 - Gm14 No
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