Gene family  

Sub-families
ORTHO001008 (43 genes in 23 species)
ORTHO026459 (4 genes in 4 species)
ORTHO060009 (2 genes in 1 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (4 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (5 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family HOM001902 has 65 genes in 23 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 65 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G04980 aly name=scaffold_200509.1;pid=893435;prot=eq;tid=924948 + scaffold_2 No
AL3G10010 aly name=fgenesh2_kg.3__1004__AT3G09800.1;pid=478303;prot=eq;tid=478303 - scaffold_3 No
AL6G30780 aly name=scaffold_603185.1;pid=911128;prot=eq;tid=942641 + scaffold_6 No
AT1G60970 ath SNARE-like superfamily protein; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: clathrin vesicle coat; EXPRESSED IN: leaf whorl, sperm cell, pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT3G09800.1); Has 621 Blast hits to 621 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 227; Fungi - 139; Plants - 149; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).;SNARE-like superfamily protein transcript=eq;prot=eq; - 1 No
AT3G09800 ath SNARE-like superfamily protein; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: clathrin vesicle coat; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT4G08520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;SNARE-like superfamily protein transcript=eq;prot=eq; - 3 No
AT4G08520 ath SNARE-like superfamily protein; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: clathrin vesicle coat, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT3G09800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;SNARE-like superfamily protein transcript=eq;prot=eq; + 4 No
BD2G23150 bdi pid=Bradi2g23150.1;tid=Bradi2g23150.1;GeneName=Bradi2g23150;transcript=eq;prot=eq + Bd2 No
BD2G54480 bdi pid=Bradi2g54480.1;tid=Bradi2g54480.1;GeneName=Bradi2g54480;transcript=eq;prot=eq + Bd2 No
BD4G08770 bdi pid=Bradi4g08770.1;tid=Bradi4g08770.1;GeneName=Bradi4g08770;transcript=eq;prot=eq + Bd4 No
CP00025G00760 cpa name=evm.TU.supercontig_25.76;pid=evm.TU.supercontig_25.76;prot=eq;transcript=eq + supercontig_25 No
CP00128G00540 cpa name=evm.TU.supercontig_128.54;pid=evm.TU.supercontig_128.54;prot=eq;transcript=eq + supercontig_128 No
CR08G02760 cre name=acegs_kg.scaffold_64000010;pid=159905;prot=eq;tid=159905;transcript=eq + chromosome_8 No
FV0G14730 fve Coatomer subunit zeta-2 (similar to) transcript=eq;prot=eq;pid=gene07487 + scf0513160 No
FV3G08810 fve Coatomer subunit zeta-1 (putative) transcript=eq;prot=eq;pid=gene24896 - LG3 No
FV3G08870 fve Coatomer subunit zeta-2 (putative) transcript=eq;prot=eq;pid=gene24902 - LG3 No
FV3G38180 fve Diaminopimelate epimerase (DAP epimerase) (probable) transcript=eq;prot=eq;pid=gene05011 + LG3 Yes
GM03G04170 gma 03 pid=16251070;transcript=eq;prot=eq;name=Glyma03g04170.1 + Gm03 No
GM07G01000 gma 07 pid=16265722;transcript=eq;prot=eq;name=Glyma07g01000.1 - Gm07 No
GM08G20370 gma 08 pid=16271843;transcript=eq;prot=eq;name=Glyma08g20370.1 - Gm08 No
GM09G02270 gma 09 pid=16274517;transcript=eq;prot=eq;name=Glyma09g02270.1 + Gm09 No
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