Gene family  

Sub-families
ORTHO001115 (42 genes in 24 species)
ORTHO026191 (4 genes in 4 species)
ORTHO043341 (2 genes in 2 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (9 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family HOM001897 has 65 genes in 24 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 65 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G23790 aly name=fgenesh1_pg.C_scaffold_3002079;pid=342316;prot=eq;tid=342316 - scaffold_3 No
AL6G36170 aly name=fgenesh2_kg.6__3214__AT4G04210.1;pid=490080;prot=eq;tid=490080 + scaffold_6 No
AL7G20150 aly name=fgenesh2_kg.7__2083__AT4G22150.1;pid=492650;prot=eq;tid=492650 + scaffold_7 No
AT3G21660 ath UBX domain-containing protein; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012), SEP domain (InterPro:IPR012989); BEST Arabidopsis thaliana protein match is: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (TAIR:AT4G15410.1); Has 1125 Blast hits to 712 proteins in 211 species: Archae - 0; Bacteria - 35; Metazoa - 526; Fungi - 227; Plants - 187; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).;UBX domain-containing protein transcript=eq;prot=eq; - 3 No
AT4G04210 ath Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX4);plant UBX domain containing protein 4 transcript=eq;prot=eq; + 4 No
AT4G15410 ath serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (PUX5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012), SEP domain (InterPro:IPR012989), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: plant UBX domain containing protein 4 (TAIR:AT4G04210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma transcript=eq;prot=eq; + 4 No
AT4G22150 ath Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX3);plant UBX domain-containing protein 3 transcript=eq;prot=eq; - 4 No
BD1G35470 bdi pid=Bradi1g35470.1;tid=Bradi1g35470.1;GeneName=Bradi1g35470;transcript=eq;prot=eq + Bd1 No
BD5G12640 bdi pid=Bradi5g12640.1;tid=Bradi5g12640.1;GeneName=Bradi5g12640;transcript=eq;prot=eq + Bd5 No
CP00132G00090 cpa name=evm.TU.supercontig_132.9;pid=evm.TU.supercontig_132.9;prot=eq;transcript=eq - supercontig_132 No
CP33096G00010 cpa name=evm.TU.contig_33096.1;pid=evm.TU.contig_33096.1;prot=eq;transcript=eq + contig_33096 No
CP33096G00020 cpa name=evm.TU.contig_33096.2;pid=evm.TU.contig_33096.2;prot=eq;transcript=eq + contig_33096 No
CR01G07120 cre name=estExt_fgenesh1_pg.C_chromosome_10458;pid=342274;prot=eq;tid=342281;transcript=eq + chromosome_1 No
FV0G50560 fve UBA and UBX domain-containing protein At4g15410 (similar to) transcript=eq;prot=eq;pid=gene00539 - scf0512932 No
FV3G01680 fve UBA and UBX domain-containing protein At4g15410 (similar to) transcript=eq;prot=eq;pid=gene19508 - LG3 No
GM02G43770 gma 02 pid=16250065;transcript=eq;prot=eq;name=Glyma02g43770.1 - Gm02 No
GM09G01010 gma 09 pid=16274361;transcript=eq;prot=eq;name=Glyma09g01010.1 - Gm09 No
GM14G05140 gma 14 pid=16294412;transcript=eq;prot=eq;name=Glyma14g05140.1 + Gm14 No
GM15G11860 gma 15 pid=16298476;transcript=eq;prot=eq;name=Glyma15g11860.1 - Gm15 No
LJ0G036340 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_015660;name=LjSGA_015660.1 + LjSGA_015660 No
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