Gene family  

Sub-families
ORTHO000924 (44 genes in 22 species)
ORTHO021605 (5 genes in 5 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (11 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (3 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family HOM001889 has 65 genes in 22 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 65 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G33700 aly name=fgenesh2_kg.1__3380__AT1G32380.1;pid=473426;prot=eq;tid=473426 + scaffold_1 No
AL4G20760 aly name=Al_scaffold_0004_2035;pid=869872;prot=eq;tid=901385 - scaffold_4 No
AL4G32290 aly name=scaffold_403379.1;pid=903878;prot=eq;tid=935391 + scaffold_4 No
AT1G32380 ath Encodes a P-dependent phosphoribosyl pyrophosphate (PRPP) synthase.;phosphoribosyl pyrophosphate (PRPP) synthase 2 transcript=eq;prot=eq; + 1 No
AT2G35390 ath Phosphoribosyltransferase family protein; FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.10 ten leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: phosphoribosyl pyrophosphate (PRPP) synthase 2 (TAIR:AT1G32380.1); Has 11486 Blast hits to 11227 proteins in 2803 species: Archae - 263; Bacteria - 6160; Metazoa - 635; Fungi - 723; Plants - 205; Viruses - 13; Other Eukaryotes - 3487 (source: NCBI BLink).;Phosphoribosyltransferase family protein transcript=eq;prot=eq; - 2 No
AT2G44530 ath Phosphoribosyltransferase family protein; FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: phosphoribosyl pyrophosphate (PRPP) synthase 2 (TAIR:AT1G32380.1); Has 11478 Blast hits to 11230 proteins in 2819 species: Archae - 260; Bacteria - 6194; Metazoa - 633; Fungi - 714; Plants - 217; Viruses - 15; Other Eukaryotes - 3445 (source: NCBI BLink).;Phosphoribosyltransferase family protein transcript=eq;prot=eq; + 2 No
BD1G35940 bdi AMP binding, ADP binding, ATP binding, GDP binding (Blast2GO) pid=Bradi1g35940.1;tid=Bradi1g35940.1;GeneName=Bradi1g35940;transcript=eq;prot=eq + Bd1 No
BD1G78697 bdi pid=Bradi1g78697.1;tid=Bradi1g78697.1;GeneName=Bradi1g78697;transcript=eq;prot=eq - Bd1 No
BD3G02680 bdi AMP binding, ADP binding, ATP binding, GDP binding (Blast2GO) pid=Bradi3g02680.1;tid=Bradi3g02680.1;GeneName=Bradi3g02680;transcript=eq;prot=eq - Bd3 No
CP00006G04210 cpa name=evm.TU.supercontig_6.422;pid=evm.TU.supercontig_6.422;prot=eq;transcript=eq - supercontig_6 No
CR08G04300 cre name=estExt_gwp_1W.C_210026;pid=137493;prot=eq;tid=137493;transcript=eq - chromosome_8 No
FV5G30490 fve Ribose-phosphate pyrophosphokinase 1 (similar to) transcript=eq;prot=eq;pid=gene10752 + LG5 No
FV7G22300 fve Ribose-phosphate pyrophosphokinase 1 (similar to) transcript=eq;prot=eq;pid=gene03246 - LG7 No
GM03G24280 gma 03 pid=16252197;transcript=eq;prot=eq;name=Glyma03g24280.1 + Gm03 No
GM05G06110 gma 05 pid=16258490;transcript=eq;prot=eq;name=Glyma05g06110.1 - Gm05 No
GM07G12660 gma 07 pid=16267089;transcript=eq;prot=eq;name=Glyma07g12660.1 + Gm07 No
GM17G16400 gma 17 pid=16305787;transcript=eq;prot=eq;name=Glyma17g16400.1 - Gm17 No
LJ0G011200 lja prot=eq;transcript=eq;scaffold=LjSGA_008379;name=LjSGA_008379.1 - LjSGA_008379 No
LJ4G013650 lja prot=eq;transcript=eq;scaffold=CM0247;name=chr4.CM0247.220.nc + chr4 No
MD00G137550 mdo transcript=eq;prot=eq;pid=MDP0000179098;tid=MDP0000179098;contig=MDC005859.428 + MDC005859.428 No
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