Gene family  

Sub-families
ORTHO001026 (43 genes in 25 species)
ORTHO033847 (3 genes in 3 species)
ORTHO037103 (3 genes in 3 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (8 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (7 genes)



The gene family HOM001884 has 65 genes in 25 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 65 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G04200 aly name=fgenesh2_kg.4__337__AT2G24200.1;pid=481277;prot=eq;tid=481277 - scaffold_4 No
AL7G10630 aly name=scaffold_701122.1;pid=913380;prot=eq;tid=944893 + scaffold_7 No
AL7G10640 aly name=Al_scaffold_0007_1012;pid=857513;prot=eq;tid=889026 + scaffold_7 No
AT2G24200 ath Cytosol aminopeptidase family protein; FUNCTIONS IN: manganese ion binding, metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: response to cadmium ion, proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M17, leucyl aminopeptidase, C-terminal (InterPro:IPR000819), Peptidase M17, leucyl aminopeptidase, N-terminal (InterPro:IPR008283), Peptidase M17, leucyl aminopeptidase (InterPro:IPR011356); BEST Arabidopsis thaliana protein match is: Cytosol aminopeptidase family protein (TAIR:AT4G30920.1); Has 9835 Blast hits to 9833 proteins in 2023 species: Archae - 18; Bacteria - 5432; Metazoa - 659; Fungi - 36; Plants - 122; Viruses - 1; Other Eukaryotes - 3567 (source: NCBI BLink).;Cytosol aminopeptidase family protein transcript=eq;prot=eq; - 2 No
AT4G30910 ath Cytosol aminopeptidase family protein; FUNCTIONS IN: manganese ion binding, metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, protein metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Peptidase M17, leucyl aminopeptidase, C-terminal (InterPro:IPR000819), Peptidase M17, leucyl aminopeptidase, N-terminal (InterPro:IPR008283), Peptidase M17, leucyl aminopeptidase (InterPro:IPR011356); BEST Arabidopsis thaliana protein match is: Cytosol aminopeptidase family protein (TAIR:AT4G30920.1); Has 9759 Blast hits to 9756 proteins in 2005 species: Archae - 18; Bacteria - 5365; Metazoa - 661; Fungi - 36; Plants - 124; Viruses - 1; Other Eukaryotes - 3554 (source: NCBI BLink).;Cytosol aminopeptidase family protein transcript=eq;prot=eq; - 4 No
AT4G30920 ath Cytosol aminopeptidase family protein; FUNCTIONS IN: manganese ion binding, metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, protein metabolic process; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Peptidase M17, leucyl aminopeptidase, C-terminal (InterPro:IPR000819), Peptidase M17, leucyl aminopeptidase, N-terminal (InterPro:IPR008283), Peptidase M17, leucyl aminopeptidase (InterPro:IPR011356); BEST Arabidopsis thaliana protein match is: Cytosol aminopeptidase family protein (TAIR:AT4G30910.1); Has 9817 Blast hits to 9813 proteins in 2024 species: Archae - 18; Bacteria - 5432; Metazoa - 663; Fungi - 36; Plants - 122; Viruses - 1; Other Eukaryotes - 3545 (source: NCBI BLink).;Cytosol aminopeptidase family protein transcript=eq;prot=eq; - 4 No
BD3G21200 bdi aminopeptidase activity, metalloexopeptidase activity (Blast2GO) pid=Bradi3g21200.1;tid=Bradi3g21200.1;GeneName=Bradi3g21200;transcript=eq;prot=eq - Bd3 No
BD3G54020 bdi aminopeptidase activity, metalloexopeptidase activity (Blast2GO) pid=Bradi3g54020.1;tid=Bradi3g54020.1;GeneName=Bradi3g54020;transcript=eq;prot=eq - Bd3 No
CP00046G01610 cpa name=evm.TU.supercontig_46.161;pid=evm.TU.supercontig_46.161;prot=eq;transcript=eq + supercontig_46 No
CP00158G00220 cpa name=evm.TU.supercontig_158.22;pid=evm.TU.supercontig_158.22;prot=eq;transcript=eq - supercontig_158 No
CR01G01590 cre name=pasa_Sanger_mRNA1802;pid=405048;prot=eq;tid=391997;transcript=eq - chromosome_1 No
CR14G03100 cre name=pasa_Sanger_mRNA12311;pid=395323;prot=eq;tid=402612;transcript=eq + chromosome_14 No
FV1G01700 fve Leucine aminopeptidase 3, chloroplastic (LAP 3), Precursor (putative) transcript=eq;prot=eq;pid=gene10082 + LG1 No
GM02G36530 gma 02 pid=16249252;transcript=eq;prot=eq;name=Glyma02g36530.1 + Gm02 No
GM16G19350 gma 16 pid=16302376;transcript=eq;prot=eq;name=Glyma16g19350.1 - Gm16 No
GM17G08150 gma 17 pid=16304831;transcript=eq;prot=eq;name=Glyma17g08150.1 - Gm17 No
GM19G22730 gma 19 pid=16312602;transcript=eq;prot=eq;name=Glyma19g22730.1 + Gm19 No
LJ0G415360 lja prot=eq;transcript=eq;scaffold=LjT06N06;name=LjT06N06.10.nd + chr0 No
LJ4G022170 lja prot=eq;transcript=eq;scaffold=CM0179;name=chr4.CM0179.140.nc + chr4 No
LJ5G021180 lja partial;prot=eq;transcript=eq;scaffold=LjT38I13;name=chr5.LjT38I13.180.nd - chr5 Yes
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