Gene family  

Sub-families
ORTHO008209 (22 genes in 18 species)
ORTHO025065 (5 genes in 4 species)
ORTHO025152 (5 genes in 4 species)
View all sub-families (14)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (6 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (16 genes)
osaindica
Oryza sativa ssp. indica (15 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
zma
Zea mays (4 genes)



The gene family HOM001854 has 66 genes in 19 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 66 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL8G23440 aly name=fgenesh2_kg.8__1683__AT5G57700.2;pid=495867;prot=eq;tid=495867 + scaffold_8 No
AT5G57700 ath BNR/Asp-box repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Neuraminidase (InterPro:IPR011040), BNR repeat (InterPro:IPR002860); Has 760 Blast hits to 752 proteins in 299 species: Archae - 6; Bacteria - 613; Metazoa - 0; Fungi - 22; Plants - 42; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).;BNR/Asp-box repeat family protein transcript=eq;prot=eq; + 5 No
BD1G26287 bdi pid=Bradi1g26287.4;tid=Bradi1g26287.4;GeneName=Bradi1g26287;transcript=eq;prot=eq - Bd1 No
BD1G77970 bdi pid=Bradi1g77970.1;tid=Bradi1g77970.1;GeneName=Bradi1g77970;transcript=eq;prot=eq - Bd1 No
BD2G08630 bdi pid=Bradi2g08630.1;tid=Bradi2g08630.1;GeneName=Bradi2g08630;transcript=eq;prot=eq + Bd2 No
BD2G08640 bdi pid=Bradi2g08640.1;tid=Bradi2g08640.1;GeneName=Bradi2g08640;transcript=eq;prot=eq + Bd2 Yes
BD4G13250 bdi pid=Bradi4g13250.1;tid=Bradi4g13250.1;GeneName=Bradi4g13250;transcript=eq;prot=eq + Bd4 No
BD4G21730 bdi pid=Bradi4g21730.1;tid=Bradi4g21730.1;GeneName=Bradi4g21730;transcript=eq;prot=eq - Bd4 No
CP00450G00050 cpa name=evm.TU.supercontig_450.5;pid=evm.TU.supercontig_450.5;prot=eq;transcript=eq + supercontig_450 No
FV4G01630 fve Pyruvate decarboxylase (PDC) (probable) transcript=eq;prot=eq;pid=gene29636 + LG4 No
GM13G01380 gma 13 pid=16289324;transcript=eq;prot=eq;name=Glyma13g01380.1 + Gm13 No
GM13G01390 gma 13 pid=16289325;transcript=eq;prot=eq;name=Glyma13g01390.1 + Gm13 No
GM17G07500 gma 17 pid=16304752;transcript=eq;prot=eq;name=Glyma17g07500.1 + Gm17 No
GM17G07510 gma 17 pid=16304755;transcript=eq;prot=eq;name=Glyma17g07510.1 + Gm17 No
LJ0G282840 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_096269;name=LjSGA_096269.1 - LjSGA_096269 No
MD00G502700 mdo transcript=eq;prot=eq;pid=MDP0000155009;tid=MDP0000155009;contig=MDC027324.18 + MDC027324.18 No
ME04829G00010 mes PACid=17990879;RNAname=cassava4.1_011952m;GeneName=cassava4.1_011952m.g;transcript=eq;prot=eq + scaffold04829 No
MT4G129180 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR011040 Neuraminidase transcript=eq;prot=eq;pid=Medtr4g129180.1; + 4 No
MT4G129200 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR011040 Neuraminidase transcript=eq;prot=eq;pid=Medtr4g129200.1; + 4 No
OS01G71540 osa expressed protein transcript=eq;prot=eq; + 1 No
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