Gene family 
- Id
- HOM001835
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO004433 (27 genes in 23 species)
ORTHO005388 (26 genes in 24 species)
ORTHO027252 (4 genes in 4 species)
View all sub-families (5)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (2 genes)
- ath
- Arabidopsis thaliana (2 genes)
- bdi
- Brachypodium distachyon (2 genes)
- cpa
- Carica papaya (3 genes)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (2 genes)
- gma
- Glycine max (3 genes)
- lja
- Lotus japonicus (2 genes)
- mdo
- Malus domestica (3 genes)
- mes
- Manihot esculenta (5 genes)
- mrcc299
- Micromonas sp. RCC299 (2 genes)
- mtr
- Medicago truncatula (5 genes)
- olu
- Ostreococcus lucimarinus (2 genes)
- osa
- Oryza sativa ssp. japonica (2 genes)
- osaindica
- Oryza sativa ssp. indica (3 genes)
- ota
- Ostreococcus tauri (3 genes)
- ppa
- Physcomitrella patens (2 genes)
- ptr
- Populus trichocarpa (4 genes)
- rco
- Ricinus communis (2 genes)
- sbi
- Sorghum bicolor (2 genes)
- smo
- Selaginella moellendorffii (4 genes)
- tca
- Theobroma cacao (3 genes)
- vca
- Volvox carteri (2 genes)
- vvi
- Vitis vinifera (3 genes)
- zma
- Zea mays (3 genes)
The gene family HOM001835 has 67 genes in 25 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM001835
Page 1 of 4, showing 20 records out of 67 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL4G17000 | aly | name=fgenesh2_kg.4__1190__AT2G32000.1;pid=482130;prot=eq;tid=482130 | - | scaffold_4 | No | |
| AL8G30570 | aly | name=fgenesh2_kg.8__2400__AT5G63920.1;pid=496584;prot=eq;tid=496584 | + | scaffold_8 | No | |
| AT2G32000 | ath | DNA topoisomerase, type IA, core; FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding; INVOLVED IN: DNA topological change, DNA unwinding involved in replication, DNA metabolic process; LOCATED IN: endomembrane system, chromosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IA, core (InterPro:IPR000380), DNA topoisomerase, type IA, DNA-binding (InterPro:IPR003602), DNA topoisomerase, type IA, domain 2 (InterPro:IPR003601), DNA topoisomerase, type IA, central (InterPro:IPR013497), DNA topoisomerase, type IA, central region, subdomain 3 (InterPro:IPR013826), Toprim domain, subgroup (InterPro:IPR006154), Toprim domain (InterPro:IPR006171), DNA topoisomerase, type IA, central region, subdomain 1 (InterPro:IPR013824); BEST Arabidopsis thaliana protein match is: topoisomerase 3alpha (TAIR:AT5G63920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;DNA topoisomerase, type IA, core | transcript=eq;prot=eq; | - | 2 | No |
| AT5G63920 | ath | Encodes topoisomerase 3alpha. Suppresses somatic crossovers. Essential for resolution of meiotic recombination intermediates.;topoisomerase 3alpha | transcript=eq;prot=eq; | + | 5 | No |
| BD1G74120 | bdi | DNA topoisomerase type I activity, zinc ion binding (Blast2GO) | pid=Bradi1g74120.1;tid=Bradi1g74120.1;GeneName=Bradi1g74120;transcript=eq;prot=eq | + | Bd1 | No |
| BD4G34290 | bdi | endodeoxyribonuclease activity (Blast2GO) | pid=Bradi4g34290.1;tid=Bradi4g34290.1;GeneName=Bradi4g34290;transcript=eq;prot=eq | + | Bd4 | No |
| CP00037G00030 | cpa | name=evm.TU.supercontig_37.3;pid=evm.TU.supercontig_37.3;prot=eq;transcript=eq | - | supercontig_37 | No | |
| CP00157G00040 | cpa | name=evm.TU.supercontig_157.4;pid=evm.TU.supercontig_157.4;prot=eq;transcript=eq | - | supercontig_157 | No | |
| CP33573G00010 | cpa | name=evm.TU.contig_33573.1;pid=evm.TU.contig_33573.1;prot=eq;transcript=eq | + | contig_33573 | Yes | |
| CR17G06110 | cre | name=pasa_Sanger_mRNA16708;pid=409534;prot=eq;tid=407048;transcript=eq | + | chromosome_17 | No | |
| FV0G21450 | fve | DNA topoisomerase 3-alpha (probable) | transcript=eq;prot=eq;pid=gene16162 | - | scf0513168 | No |
| FV4G17990 | fve | DNA topoisomerase 3-beta-1 (probable) | transcript=eq;prot=eq;pid=gene16875 | + | LG4 | No |
| GM06G16140 | gma | 06 | pid=16263135;transcript=eq;prot=eq;name=Glyma06g16140.1 | - | Gm06 | Yes |
| GM06G16200 | gma | 06 | pid=16263137;transcript=eq;prot=eq;name=Glyma06g16200.1 | - | Gm06 | No |
| GM11G36800 | gma | 11 | pid=16285618;transcript=eq;prot=eq;name=Glyma11g36800.1 | + | Gm11 | No |
| LJ1G015600 | lja | partial;prot=eq;transcript=eq;scaffold=CM0036;name=chr1.CM0036.360.nd | + | chr1 | No | |
| LJ6G004490 | lja | partial;prot=eq;transcript=eq;scaffold=LjT13N05;name=chr6.LjT13N05.50.nc | + | chr6 | No | |
| MD00G066700 | mdo | transcript=eq;prot=eq;pid=MDP0000171977;tid=MDP0000171977;contig=MDC002792.276 | - | MDC002792.276 | No | |
| MD00G127990 | mdo | transcript=eq;prot=eq;pid=MDP0000257212;tid=MDP0000257212;contig=MDC005454.105 | - | MDC005454.105 | No | |
| MD00G128000 | mdo | transcript=eq;prot=eq;pid=MDP0000148193;tid=MDP0000148193;contig=MDC005454.90 | + | MDC005454.90 | No |