Gene family  

Sub-families
ORTHO004433 (27 genes in 23 species)
ORTHO005388 (26 genes in 24 species)
ORTHO027252 (4 genes in 4 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (3 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (5 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (3 genes)



The gene family HOM001835 has 67 genes in 25 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 67 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G17000 aly name=fgenesh2_kg.4__1190__AT2G32000.1;pid=482130;prot=eq;tid=482130 - scaffold_4 No
AL8G30570 aly name=fgenesh2_kg.8__2400__AT5G63920.1;pid=496584;prot=eq;tid=496584 + scaffold_8 No
AT2G32000 ath DNA topoisomerase, type IA, core; FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding; INVOLVED IN: DNA topological change, DNA unwinding involved in replication, DNA metabolic process; LOCATED IN: endomembrane system, chromosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IA, core (InterPro:IPR000380), DNA topoisomerase, type IA, DNA-binding (InterPro:IPR003602), DNA topoisomerase, type IA, domain 2 (InterPro:IPR003601), DNA topoisomerase, type IA, central (InterPro:IPR013497), DNA topoisomerase, type IA, central region, subdomain 3 (InterPro:IPR013826), Toprim domain, subgroup (InterPro:IPR006154), Toprim domain (InterPro:IPR006171), DNA topoisomerase, type IA, central region, subdomain 1 (InterPro:IPR013824); BEST Arabidopsis thaliana protein match is: topoisomerase 3alpha (TAIR:AT5G63920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;DNA topoisomerase, type IA, core transcript=eq;prot=eq; - 2 No
AT5G63920 ath Encodes topoisomerase 3alpha. Suppresses somatic crossovers. Essential for resolution of meiotic recombination intermediates.;topoisomerase 3alpha transcript=eq;prot=eq; + 5 No
BD1G74120 bdi DNA topoisomerase type I activity, zinc ion binding (Blast2GO) pid=Bradi1g74120.1;tid=Bradi1g74120.1;GeneName=Bradi1g74120;transcript=eq;prot=eq + Bd1 No
BD4G34290 bdi endodeoxyribonuclease activity (Blast2GO) pid=Bradi4g34290.1;tid=Bradi4g34290.1;GeneName=Bradi4g34290;transcript=eq;prot=eq + Bd4 No
CP00037G00030 cpa name=evm.TU.supercontig_37.3;pid=evm.TU.supercontig_37.3;prot=eq;transcript=eq - supercontig_37 No
CP00157G00040 cpa name=evm.TU.supercontig_157.4;pid=evm.TU.supercontig_157.4;prot=eq;transcript=eq - supercontig_157 No
CP33573G00010 cpa name=evm.TU.contig_33573.1;pid=evm.TU.contig_33573.1;prot=eq;transcript=eq + contig_33573 Yes
CR17G06110 cre name=pasa_Sanger_mRNA16708;pid=409534;prot=eq;tid=407048;transcript=eq + chromosome_17 No
FV0G21450 fve DNA topoisomerase 3-alpha (probable) transcript=eq;prot=eq;pid=gene16162 - scf0513168 No
FV4G17990 fve DNA topoisomerase 3-beta-1 (probable) transcript=eq;prot=eq;pid=gene16875 + LG4 No
GM06G16140 gma 06 pid=16263135;transcript=eq;prot=eq;name=Glyma06g16140.1 - Gm06 Yes
GM06G16200 gma 06 pid=16263137;transcript=eq;prot=eq;name=Glyma06g16200.1 - Gm06 No
GM11G36800 gma 11 pid=16285618;transcript=eq;prot=eq;name=Glyma11g36800.1 + Gm11 No
LJ1G015600 lja partial;prot=eq;transcript=eq;scaffold=CM0036;name=chr1.CM0036.360.nd + chr1 No
LJ6G004490 lja partial;prot=eq;transcript=eq;scaffold=LjT13N05;name=chr6.LjT13N05.50.nc + chr6 No
MD00G066700 mdo transcript=eq;prot=eq;pid=MDP0000171977;tid=MDP0000171977;contig=MDC002792.276 - MDC002792.276 No
MD00G127990 mdo transcript=eq;prot=eq;pid=MDP0000257212;tid=MDP0000257212;contig=MDC005454.105 - MDC005454.105 No
MD00G128000 mdo transcript=eq;prot=eq;pid=MDP0000148193;tid=MDP0000148193;contig=MDC005454.90 + MDC005454.90 No
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