Gene family 
- Id
- HOM001831
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO002510 (32 genes in 22 species)
ORTHO020275 (6 genes in 1 species)
ORTHO026464 (4 genes in 4 species)
View all sub-families (10)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (1 gene)
- ath
- Arabidopsis thaliana (1 gene)
- bdi
- Brachypodium distachyon (2 genes)
- cpa
- Carica papaya (2 genes)
- cre
- Chlamydomonas reinhardtii (5 genes)
- fve
- Fragaria vesca (2 genes)
- gma
- Glycine max (12 genes)
- lja
- Lotus japonicus (1 gene)
- mdo
- Malus domestica (5 genes)
- mes
- Manihot esculenta (4 genes)
- mrcc299
- Micromonas sp. RCC299 (5 genes)
- mtr
- Medicago truncatula (1 gene)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (2 genes)
- osaindica
- Oryza sativa ssp. indica (1 gene)
- ota
- Ostreococcus tauri (1 gene)
- ppa
- Physcomitrella patens (3 genes)
- ptr
- Populus trichocarpa (4 genes)
- rco
- Ricinus communis (2 genes)
- sbi
- Sorghum bicolor (2 genes)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (2 genes)
- vca
- Volvox carteri (4 genes)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (2 genes)
The gene family HOM001831 has 67 genes in 25 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM001831
Page 1 of 4, showing 20 records out of 67 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL6G00860 | aly | name=fgenesh2_kg.6__83__AT5G01260.2;pid=486949;prot=eq;tid=486949 | - | scaffold_6 | No | |
| AT5G01260 | ath | Carbohydrate-binding-like fold; FUNCTIONS IN: carbohydrate binding, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin-like fold (InterPro:IPR013783), Carbohydrate-binding-like fold (InterPro:IPR013784), Glycoside hydrolase, carbohydrate-binding (InterPro:IPR002044); BEST Arabidopsis thaliana protein match is: catalytics;carbohydrate kinases;phosphoglucan, water dikinases (TAIR:AT5G26570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Carbohydrate-binding-like fold | transcript=eq;prot=eq; | + | 5 | No |
| BD2G23780 | bdi | pid=Bradi2g23780.1;tid=Bradi2g23780.1;GeneName=Bradi2g23780;transcript=eq;prot=eq | + | Bd2 | No | |
| BD2G55380 | bdi | pid=Bradi2g55380.1;tid=Bradi2g55380.1;GeneName=Bradi2g55380;transcript=eq;prot=eq | + | Bd2 | No | |
| CP00112G00330 | cpa | name=evm.TU.supercontig_112.33;pid=evm.TU.supercontig_112.33;prot=eq;transcript=eq | - | supercontig_112 | No | |
| CP00163G00130 | cpa | name=evm.TU.supercontig_163.13;pid=evm.TU.supercontig_163.13;prot=eq;transcript=eq | + | supercontig_163 | No | |
| CR02G03880 | cre | name=au.g8634_t2;pid=290629;prot=eq;tid=290636;transcript=eq | - | chromosome_2 | No | |
| CR03G07250 | cre | name=estExt_fgenesh1_pm.C_chromosome_30366;pid=377743;prot=eq;tid=377750;transcript=eq | + | chromosome_3 | No | |
| CR06G04370 | cre | name=pasa_Sanger_mRNA27915;pid=403088;prot=eq;tid=418392;transcript=eq | - | chromosome_6 | No | |
| CR09G04500 | cre | name=pasa_Sanger_mRNA33481;pid=399392;prot=eq;tid=424003;transcript=eq | - | chromosome_9 | No | |
| CR09G06130 | cre | name=Chlre2_kg.scaffold_30000131;pid=150073;prot=eq;tid=150073;transcript=eq | - | chromosome_9 | No | |
| FV3G22240 | fve | Pentatricopeptide repeat-containing protein At2g29760, chloroplastic, Precursor (similar to) | transcript=eq;prot=eq;pid=gene07880 | + | LG3 | No |
| FV6G10680 | fve | Alpha-amylase, Precursor (probable) | transcript=eq;prot=eq;pid=gene18850 | - | LG6 | No |
| GM00G00600 | gma | 165 | pid=16242879;transcript=eq;prot=eq;name=Glyma0165s00200.1 | - | scaffold_165 | No |
| GM00G00680 | gma | 304 | pid=16250603;transcript=eq;prot=eq;name=Glyma0304s00210.1 | + | scaffold_304 | No |
| GM00G00920 | gma | 1061 | pid=16278074;transcript=eq;prot=eq;name=Glyma1061s00200.1 | - | scaffold_1061 | No |
| GM01G28520 | gma | 01 | pid=16244653;transcript=eq;prot=eq;name=Glyma01g28520.1 | + | Gm01 | No |
| GM03G08820 | gma | 03 | pid=16251503;transcript=eq;prot=eq;name=Glyma03g08820.1 | - | Gm03 | No |
| GM03G08850 | gma | 03 | pid=16251506;transcript=eq;prot=eq;name=Glyma03g08850.1 | - | Gm03 | No |
| GM03G08880 | gma | 03 | pid=16251509;transcript=eq;prot=eq;name=Glyma03g08880.1 | - | Gm03 | No |