Gene family  

Sub-families
ORTHO007890 (22 genes in 17 species)
ORTHO010245 (19 genes in 17 species)
ORTHO016281 (9 genes in 8 species)
View all sub-families (7)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (3 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (10 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (4 genes)
mtr
Medicago truncatula (4 genes)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (4 genes)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (4 genes)



The gene family HOM001823 has 67 genes in 18 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 67 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G12280 aly name=fgenesh2_kg.4__780__AT2G27830.1;pid=481720;prot=eq;tid=481720 - scaffold_4 No
AL6G35300 aly name=fgenesh1_pg.C_scaffold_6002890;pid=352297;prot=eq;tid=352297 - scaffold_6 No
AT2G27830 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22758.1); Has 131 Blast hits to 131 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 2 No
AT4G22758 ath unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27830.1). transcript=eq;prot=eq; + 4 No
BD1G09780 bdi pid=Bradi1g09780.1;tid=Bradi1g09780.1;GeneName=Bradi1g09780;transcript=eq;prot=eq + Bd1 No
BD5G08990 bdi pid=Bradi5g08990.1;tid=Bradi5g08990.1;GeneName=Bradi5g08990;transcript=eq;prot=eq - Bd5 No
CP00029G00750 cpa name=evm.TU.supercontig_29.75;pid=evm.TU.supercontig_29.75;prot=eq;transcript=eq - supercontig_29 No
CP00029G00760 cpa name=evm.TU.supercontig_29.76;pid=evm.TU.supercontig_29.76;prot=eq;transcript=eq - supercontig_29 Yes
CP00047G00620 cpa name=evm.TU.supercontig_47.62;pid=evm.TU.supercontig_47.62;prot=eq;transcript=eq - supercontig_47 No
FV3G16290 fve hypothetical protein transcript=eq;prot=eq;pid=gene14383 + LG3 No
FV5G00950 fve hypothetical protein transcript=eq;prot=eq;pid=gene32305 + LG5 No
GM01G42170 gma 01 pid=16246025;transcript=eq;prot=eq;name=Glyma01g42170.1 + Gm01 No
GM01G42180 gma 01 pid=16246026;transcript=eq;prot=eq;name=Glyma01g42180.1 + Gm01 No
GM05G04000 gma 05 pid=16258253;transcript=eq;prot=eq;name=Glyma05g04000.1 + Gm05 No
GM11G03190 gma 11 pid=16282509;transcript=eq;prot=eq;name=Glyma11g03190.1 - Gm11 No
GM11G03200 gma 11 pid=16282510;transcript=eq;prot=eq;name=Glyma11g03200.1 - Gm11 No
GM11G19450 gma 11 pid=16284341;transcript=eq;prot=eq;name=Glyma11g19450.1 + Gm11 No
GM12G09010 gma 12 pid=16286923;transcript=eq;prot=eq;name=Glyma12g09010.1 - Gm12 No
GM12G30620 gma 12 pid=16288421;transcript=eq;prot=eq;name=Glyma12g30620.1 - Gm12 No
GM17G05330 gma 17 pid=16304488;transcript=eq;prot=eq;name=Glyma17g05330.1 + Gm17 No
<< previous
1 | 2 | 3 | 4 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier