Gene family  

Sub-families
ORTHO009638 (20 genes in 16 species)
ORTHO013522 (13 genes in 9 species)
ORTHO019807 (6 genes in 6 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (3 genes)
fve
Fragaria vesca (5 genes)
gma
Glycine max (9 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (7 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (4 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (4 genes)



The gene family HOM001821 has 67 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 67 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G17860 aly name=fgenesh2_kg.2__1226__AT1G69610.1;pid=476096;prot=eq;tid=476096 + scaffold_2 No
AL3G00940 aly name=fgenesh2_kg.3__113__AT3G01175.1;pid=477412;prot=eq;tid=477412 - scaffold_3 No
AL3G22070 aly name=fgenesh2_kg.3__2246__AT3G20260.1;pid=479545;prot=eq;tid=479545 - scaffold_3 No
AL7G38510 aly name=fgenesh2_kg.7__3446__AT5G39785.2;pid=494013;prot=eq;tid=494013 - scaffold_7 No
AT1G69610 ath FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: N-terminal protein myristoylation, translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195), Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1666) (TAIR:AT5G39785.1); Has 289 Blast hits to 276 proteins in 65 species: Archae - 3; Bacteria - 18; Metazoa - 43; Fungi - 27; Plants - 92; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).;Protein of unknown function (DUF1666) transcript=eq;prot=eq; + 1 No
AT3G01175 ath Protein of unknown function (DUF1666); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1666) (TAIR:AT5G39785.2); Has 140 Blast hits to 138 proteins in 34 species: Archae - 0; Bacteria - 8; Metazoa - 4; Fungi - 7; Plants - 86; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).;Protein of unknown function (DUF1666) transcript=eq;prot=eq; + 3 No
AT3G20260 ath FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195), Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1666) (TAIR:AT1G73850.1); Has 288 Blast hits to 284 proteins in 72 species: Archae - 0; Bacteria - 2; Metazoa - 64; Fungi - 36; Plants - 99; Viruses - 14; Other Eukaryotes - 73 (source: NCBI BLink).;Protein of unknown function (DUF1666) transcript=eq;prot=eq; - 3 No
AT5G39785 ath FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195), Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1666) (TAIR:AT1G69610.1); Has 458 Blast hits to 427 proteins in 93 species: Archae - 0; Bacteria - 15; Metazoa - 64; Fungi - 53; Plants - 93; Viruses - 4; Other Eukaryotes - 229 (source: NCBI BLink).;Protein of unknown function (DUF1666) transcript=eq;prot=eq; + 5 No
BD3G40550 bdi pid=Bradi3g40550.1;tid=Bradi3g40550.1;GeneName=Bradi3g40550;transcript=eq;prot=eq - Bd3 No
BD4G30200 bdi protein serine/threonine kinase activity (Blast2GO) pid=Bradi4g30200.1;tid=Bradi4g30200.1;GeneName=Bradi4g30200;transcript=eq;prot=eq - Bd4 No
CP00014G00010 cpa name=evm.TU.supercontig_14.1;pid=evm.TU.supercontig_14.1;prot=eq;transcript=eq + supercontig_14 No
CP00014G00890 cpa name=evm.TU.supercontig_14.89;pid=evm.TU.supercontig_14.89;prot=eq;transcript=eq + supercontig_14 No
CP00128G00220 cpa name=evm.TU.supercontig_128.22;pid=evm.TU.supercontig_128.22;prot=eq;transcript=eq - supercontig_128 No
FV0G05560 fve Interaptin (probable) transcript=eq;prot=eq;pid=gene04746 - scf0513158 No
FV0G18010 fve Elongation factor Ts (EF-Ts) (probable) transcript=eq;prot=eq;pid=gene05351 - scf0513160 No
FV0G27270 fve Putative DNA repair protein RAD23-1 (AtRAD23-1) (similar to) transcript=eq;prot=eq;pid=gene16730 + scf0513168 No
FV0G27300 fve Coiled-coil domain-containing protein 102A (probable) transcript=eq;prot=eq;pid=gene16733 + scf0513168 No
FV6G44580 fve Gelsolin-related protein of 125 kDa (GRP125) (probable) transcript=eq;prot=eq;pid=gene03819 + LG6 No
GM01G05820 gma 01 pid=16243538;transcript=eq;prot=eq;name=Glyma01g05820.1 + Gm01 No
GM02G11930 gma 02 pid=16247786;transcript=eq;prot=eq;name=Glyma02g11930.1 - Gm02 No
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