Gene family  

Sub-families
ORTHO003447 (29 genes in 20 species)
ORTHO016093 (9 genes in 7 species)
ORTHO022395 (5 genes in 5 species)
View all sub-families (8)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (9 genes)
lja
Lotus japonicus (8 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (7 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family HOM001812 has 67 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 67 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G09860 aly name=scaffold_400992.1;pid=901491;prot=eq;tid=933004 - scaffold_4 No
AL4G17630 aly name=fgenesh2_kg.4__1242__AT2G32560.1;pid=482182;prot=eq;tid=482182 + scaffold_4 No
AL4G28120 aly name=fgenesh1_pm.C_scaffold_4001860;pid=321803;prot=eq;tid=321803 - scaffold_4 No
AT2G26850 ath F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G32560.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; - 2 No
AT2G32560 ath F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G26850.1); Has 86 Blast hits to 86 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; + 2 No
AT2G41170 ath F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G26850.1); Has 87 Blast hits to 86 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; - 2 No
BD2G10870 bdi F-Box pid=Bradi2g10870.1;tid=Bradi2g10870.1;GeneName=Bradi2g10870;transcript=eq;prot=eq + Bd2 No
BD2G52810 bdi F-Box pid=Bradi2g52810.1;tid=Bradi2g52810.1;GeneName=Bradi2g52810;transcript=eq;prot=eq - Bd2 No
CP00034G01790 cpa name=evm.TU.supercontig_34.179;pid=evm.TU.supercontig_34.179;prot=eq;transcript=eq + supercontig_34 No
CP00092G00880 cpa name=evm.TU.supercontig_92.88;pid=evm.TU.supercontig_92.88;prot=eq;transcript=eq - supercontig_92 No
FV2G22390 fve F-box protein At2g32560 (similar to) transcript=eq;prot=eq;pid=gene32639 + LG2 No
FV2G47750 fve F-box protein At2g26850 (similar to) transcript=eq;prot=eq;pid=gene15361 + LG2 No
GM02G44660 gma 02 pid=16250181;transcript=eq;prot=eq;name=Glyma02g44660.1 - Gm02 No
GM03G28210 gma 03 pid=16252592;transcript=eq;prot=eq;name=Glyma03g28210.1 - Gm03 No
GM03G28220 gma 03 pid=16252593;transcript=eq;prot=eq;name=Glyma03g28220.1 - Gm03 No
GM07G36360 gma 07 pid=16268910;transcript=eq;prot=eq;name=Glyma07g36360.1 - Gm07 No
GM10G18630 gma 10 pid=16279636;transcript=eq;prot=eq;name=Glyma10g18630.1 + Gm10 No
GM14G04080 gma 14 pid=16294294;transcript=eq;prot=eq;name=Glyma14g04080.1 + Gm14 No
GM19G30990 gma 19 pid=16313352;transcript=eq;prot=eq;name=Glyma19g30990.1 - Gm19 No
GM19G31000 gma 19 pid=16313353;transcript=eq;prot=eq;name=Glyma19g31000.1 - Gm19 No
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