Gene family  

Sub-families
ORTHO004467 (27 genes in 21 species)
ORTHO005492 (25 genes in 18 species)
ORTHO021468 (5 genes in 5 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (8 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (4 genes)
mtr
Medicago truncatula (4 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (5 genes)



The gene family HOM001802 has 67 genes in 21 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 67 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G12820 aly name=fgenesh2_kg.1__1349__AT1G12450.1;pid=471395;prot=eq;tid=471395 + scaffold_1 No
AL5G01540 aly name=fgenesh2_kg.5__145__AT2G02370.1;pid=484153;prot=eq;tid=484153 + scaffold_5 No
AL6G35170 aly name=fgenesh2_kg.6__3153__AT4G12000.1;pid=490019;prot=eq;tid=490019 - scaffold_6 No
AL7G19350 aly name=fgenesh2_kg.7__2018__AT4G22850.1;pid=492585;prot=eq;tid=492585 - scaffold_7 No
AT1G12450 ath SNARE associated Golgi protein family; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT4G22850.1); Has 1732 Blast hits to 1729 proteins in 535 species: Archae - 6; Bacteria - 860; Metazoa - 122; Fungi - 106; Plants - 250; Viruses - 0; Other Eukaryotes - 388 (source: NCBI BLink).;SNARE associated Golgi protein family transcript=eq;prot=eq; + 1 No
AT2G02370 ath SNARE associated Golgi protein family; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT1G12450.1); Has 2420 Blast hits to 2420 proteins in 703 species: Archae - 6; Bacteria - 1288; Metazoa - 120; Fungi - 130; Plants - 226; Viruses - 0; Other Eukaryotes - 650 (source: NCBI BLink).;SNARE associated Golgi protein family transcript=eq;prot=eq; + 2 No
AT4G12000 ath SNARE associated Golgi protein family; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT4G22850.1); Has 1565 Blast hits to 1562 proteins in 407 species: Archae - 8; Bacteria - 720; Metazoa - 121; Fungi - 35; Plants - 266; Viruses - 0; Other Eukaryotes - 415 (source: NCBI BLink).;SNARE associated Golgi protein family transcript=eq;prot=eq; - 4 No
AT4G22850 ath SNARE associated Golgi protein family; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT4G12000.1); Has 1827 Blast hits to 1824 proteins in 531 species: Archae - 7; Bacteria - 902; Metazoa - 120; Fungi - 93; Plants - 292; Viruses - 0; Other Eukaryotes - 413 (source: NCBI BLink).;SNARE associated Golgi protein family transcript=eq;prot=eq; + 4 No
BD1G20310 bdi pid=Bradi1g20310.1;tid=Bradi1g20310.1;GeneName=Bradi1g20310;transcript=eq;prot=eq + Bd1 No
BD1G28390 bdi pid=Bradi1g28390.1;tid=Bradi1g28390.1;GeneName=Bradi1g28390;transcript=eq;prot=eq + Bd1 No
BD1G61350 bdi pid=Bradi1g61350.1;tid=Bradi1g61350.1;GeneName=Bradi1g61350;transcript=eq;prot=eq - Bd1 No
CP00017G00180 cpa name=evm.TU.supercontig_17.18;pid=evm.TU.supercontig_17.18;prot=eq;transcript=eq - supercontig_17 No
CP00029G00560 cpa name=evm.TU.supercontig_29.56;pid=evm.TU.supercontig_29.56;prot=eq;transcript=eq - supercontig_29 No
CR02G03290 cre name=pasa_Sanger_mRNA18510;pid=414240;prot=eq;tid=408871;transcript=eq + chromosome_2 No
FV5G01110 fve TVP38/TMEM64 family membrane protein slr0305 (probable) transcript=eq;prot=eq;pid=gene32321 + LG5 No
FV5G27380 fve TVP38/TMEM64 family membrane protein slr0305 (probable) transcript=eq;prot=eq;pid=gene29286 - LG5 No
GM01G42270 gma 01 pid=16246038;transcript=eq;prot=eq;name=Glyma01g42270.1 + Gm01 No
GM05G04110 gma 05 pid=16258266;transcript=eq;prot=eq;name=Glyma05g04110.1 + Gm05 No
GM07G40080 gma 07 pid=16269354;transcript=eq;prot=eq;name=Glyma07g40080.1 + Gm07 No
GM09G02150 gma 09 pid=16274502;transcript=eq;prot=eq;name=Glyma09g02150.1 + Gm09 No
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