Gene family  

Sub-families
ORTHO000798 (47 genes in 21 species)
ORTHO022718 (5 genes in 5 species)
ORTHO031921 (3 genes in 3 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (5 genes)



The gene family HOM001799 has 67 genes in 24 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 67 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G18480 aly name=scaffold_501919.1;pid=906215;prot=eq;tid=937728 - scaffold_5 No
AL6G24450 aly name=fgenesh2_kg.6__2438__AT5G24390.1;pid=489304;prot=eq;tid=489304 - scaffold_6 No
AL7G35670 aly name=fgenesh1_pg.C_scaffold_7002952;pid=355779;prot=eq;tid=355779 - scaffold_7 No
AL8G18240 aly name=fgenesh2_kg.8__1249__AT5G53570.1;pid=495433;prot=eq;tid=495433 - scaffold_8 No
AT3G49350 ath Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT5G24390.1); Has 4289 Blast hits to 3657 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 2316; Fungi - 775; Plants - 693; Viruses - 0; Other Eukaryotes - 505 (source: NCBI BLink).;Ypt/Rab-GAP domain of gyp1p superfamily protein transcript=eq;prot=eq; - 3 No
AT5G24390 ath Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT3G49350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Ypt/Rab-GAP domain of gyp1p superfamily protein transcript=eq;prot=eq; - 5 No
AT5G41940 ath Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT5G53570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Ypt/Rab-GAP domain of gyp1p superfamily protein transcript=eq;prot=eq; + 5 No
AT5G53570 ath Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT3G49350.1); Has 4559 Blast hits to 4121 proteins in 234 species: Archae - 0; Bacteria - 21; Metazoa - 2510; Fungi - 811; Plants - 657; Viruses - 1; Other Eukaryotes - 559 (source: NCBI BLink).;Ypt/Rab-GAP domain of gyp1p superfamily protein transcript=eq;prot=eq; - 5 No
BD3G30880 bdi Rab GTPase binding (Blast2GO) pid=Bradi3g30880.1;tid=Bradi3g30880.1;GeneName=Bradi3g30880;transcript=eq;prot=eq + Bd3 No
BD3G42170 bdi Rab GTPase binding (Blast2GO) pid=Bradi3g42170.1;tid=Bradi3g42170.1;GeneName=Bradi3g42170;transcript=eq;prot=eq + Bd3 No
BD4G35880 bdi Rab GTPase binding (Blast2GO) pid=Bradi4g35880.2;tid=Bradi4g35880.2;GeneName=Bradi4g35880;transcript=eq;prot=eq + Bd4 No
CP00003G01350 cpa name=evm.TU.supercontig_3.135;pid=evm.TU.supercontig_3.135;prot=eq;transcript=eq - supercontig_3 No
CP00003G01360 cpa name=evm.TU.supercontig_3.136;pid=evm.TU.supercontig_3.136;prot=eq;transcript=eq - supercontig_3 No
CR12G10310 cre name=fgenesh2_pg.C_scaffold_18000135;pid=172469;prot=eq;tid=172469;transcript=eq + chromosome_12 No
CR17G04080 cre name=SAN_Chlre2_kg.scaffold_54000027;pid=195588;prot=eq;tid=195588;transcript=eq + chromosome_17 No
FV0G41950 fve GTPase-activating protein GYP7 (probable) transcript=eq;prot=eq;pid=gene01900 + scf0512956 No
FV7G35310 fve GTPase-activating protein GYP7 (probable) transcript=eq;prot=eq;pid=gene12769 + LG7 No
GM04G41000 gma 04 pid=16257463;transcript=eq;prot=eq;name=Glyma04g41000.1 + Gm04 No
GM06G13850 gma 06 pid=16262861;transcript=eq;prot=eq;name=Glyma06g13850.1 - Gm06 No
GM14G25810 gma 14 pid=16296054;transcript=eq;prot=eq;name=Glyma14g25810.1 - Gm14 No
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