Gene family  

Sub-families
ORTHO006667 (24 genes in 22 species)
ORTHO009322 (20 genes in 17 species)
ORTHO011017 (18 genes in 16 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (5 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (4 genes)
mtr
Medicago truncatula (4 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (4 genes)



The gene family HOM001790 has 68 genes in 22 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 68 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G29570 aly name=fgenesh2_kg.3__2748__AT3G25480.1;pid=480047;prot=eq;tid=480047 - scaffold_3 No
AL6G40560 aly name=fgenesh1_pg.C_scaffold_6003322;pid=352729;prot=eq;tid=352729 - scaffold_6 No
AT3G25480 ath Rhodanese/Cell cycle control phosphatase superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: thylakoid rhodanese-like (TAIR:AT4G01050.1); Has 72 Blast hits to 72 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Rhodanese/Cell cycle control phosphatase superfamily protein transcript=eq;prot=eq; - 3 No
AT4G01040 ath Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 828 Blast hits to 823 proteins in 284 species: Archae - 0; Bacteria - 578; Metazoa - 178; Fungi - 2; Plants - 34; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).;Glycosyl hydrolase superfamily protein transcript=eq;prot=eq; + 4 No
AT4G01050 ath hydroxyproline-rich glycoprotein family protein, contains a rhodanese homology domain. Required for anchoring the FNR flavoenzyme to the thylakoid membranes and sustaining high efficiency photosynthetic linear electron flow.;thylakoid rhodanese-like transcript=eq;prot=eq; + 4 No
BD2G43770 bdi chitinase activity (Blast2GO) pid=Bradi2g43770.1;tid=Bradi2g43770.1;GeneName=Bradi2g43770;transcript=eq;prot=eq + Bd2 No
BD2G57386 bdi pid=Bradi2g57386.1;tid=Bradi2g57386.1;GeneName=Bradi2g57386;transcript=eq;prot=eq - Bd2 No
BD3G09660 bdi pid=Bradi3g09660.1;tid=Bradi3g09660.1;GeneName=Bradi3g09660;transcript=eq;prot=eq + Bd3 No
CP00008G00370 cpa name=evm.TU.supercontig_8.37;pid=evm.TU.supercontig_8.37;prot=eq;transcript=eq - supercontig_8 No
CP00273G00100 cpa name=evm.TU.supercontig_273.10;pid=evm.TU.supercontig_273.10;prot=eq;transcript=eq + supercontig_273 No
CP00490G00020 cpa name=evm.TU.supercontig_490.2;pid=evm.TU.supercontig_490.2;prot=eq;transcript=eq - supercontig_490 No
CR03G10820 cre name=estExt_fgenesh2_pg.C_190271;pid=190601;prot=eq;tid=190601;transcript=eq + chromosome_3 No
CR03G10830 cre name=estExt_fgenesh2_pg.C_190270;pid=190600;prot=eq;tid=190600;transcript=eq + chromosome_3 Yes
FV2G13030 fve hypothetical protein transcript=eq;prot=eq;pid=gene17486 + LG2 No
FV7G06030 fve Chitinase domain-containing protein 1, Precursor (probable) transcript=eq;prot=eq;pid=gene19212 + LG7 No
FV7G06040 fve conserved hypothetical protein transcript=eq;prot=eq;pid=gene19213 + LG7 No
GM03G41760 gma 03 pid=16254177;transcript=eq;prot=eq;name=Glyma03g41760.1 - Gm03 No
GM07G06300 gma 07 pid=16266389;transcript=eq;prot=eq;name=Glyma07g06300.1 + Gm07 No
GM09G38180 gma 09 pid=16277604;transcript=eq;prot=eq;name=Glyma09g38180.1 - Gm09 No
GM16G02940 gma 16 pid=16301273;transcript=eq;prot=eq;name=Glyma16g02940.1 + Gm16 No
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