Gene family  

Sub-families
ORTHO002249 (33 genes in 23 species)
ORTHO008545 (21 genes in 18 species)
ORTHO048074 (2 genes in 2 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (8 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (3 genes)



The gene family HOM001769 has 68 genes in 25 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 68 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G20710 aly name=fgenesh1_pm.C_scaffold_3001689;pid=318673;prot=eq;tid=318673 + scaffold_3 No
AL6G08020 aly name=fgenesh2_kg.6__796__AT5G08300.1;pid=487662;prot=eq;tid=487662 + scaffold_6 No
AL6G23020 aly name=fgenesh2_kg.6__2318__AT5G23250.1;pid=489184;prot=eq;tid=489184 + scaffold_6 No
AT3G19180 ath Encodes a chloroplast division factor located in the plastid inner envelope with its N-terminus exposed to the stroma. PARC6 influences FtsZ assembly and is required for recruitment of PDV1 during chloroplast division.;paralog of ARC6 transcript=eq;prot=eq; + 3 No
AT5G08300 ath Succinyl-CoA ligase, alpha subunit; FUNCTIONS IN: succinate-CoA ligase (GDP-forming) activity, copper ion binding, metal ion binding; INVOLVED IN: response to cadmium ion, metabolic process; LOCATED IN: mitochondrion, cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA ligase, alpha subunit (InterPro:IPR005810), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), NAD(P)-binding domain (InterPro:IPR016040), ATP-citrate lyase/succinyl-CoA ligase, active site (InterPro:IPR017440), CoA-binding (InterPro:IPR003781), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: Succinyl-CoA ligase, alpha subunit (TAIR:AT5G23250.1); Has 9706 Blast hits to 9705 proteins in 2093 species: Archae - 338; Bacteria - 4848; Metazoa - 444; Fungi - 287; Plants - 143; Viruses - 0; Other Eukaryotes - 3646 (source: NCBI BLink).;Succinyl-CoA ligase, alpha subunit transcript=eq;prot=eq; + 5 No
AT5G23250 ath Succinyl-CoA ligase, alpha subunit; FUNCTIONS IN: succinate-CoA ligase (GDP-forming) activity, copper ion binding; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA ligase, alpha subunit (InterPro:IPR005810), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), NAD(P)-binding domain (InterPro:IPR016040), CoA-binding (InterPro:IPR003781), ATP-citrate lyase/succinyl-CoA ligase, active site (InterPro:IPR017440), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: Succinyl-CoA ligase, alpha subunit (TAIR:AT5G08300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Succinyl-CoA ligase, alpha subunit transcript=eq;prot=eq; + 5 No
BD1G23600 bdi succinate-CoA ligase (ADP-forming) activity, succinate-CoA ligase (GDP-forming) activity (Blast2GO) pid=Bradi1g23600.1;tid=Bradi1g23600.1;GeneName=Bradi1g23600;transcript=eq;prot=eq - Bd1 No
BD5G26047 bdi pid=Bradi5g26047.1;tid=Bradi5g26047.1;GeneName=Bradi5g26047;transcript=eq;prot=eq - Bd5 No
CP00000G01130 cpa name=evm.TU.supercontig_0.113;pid=evm.TU.supercontig_0.113;prot=eq;transcript=eq - supercontig_0 No
CP00168G00190 cpa name=evm.TU.supercontig_168.19;pid=evm.TU.supercontig_168.19;prot=eq;transcript=eq + supercontig_168 No
CP41191G00010 cpa name=evm.TU.contig_41191.1;pid=evm.TU.contig_41191.1;prot=eq;transcript=eq - contig_41191 No
CR03G09360 cre name=MHS_estExt_GenewiseH_1.C_190100;pid=196570;prot=eq;tid=196575;transcript=eq + chromosome_3 No
FV5G15490 fve Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial (SCS-alpha-2), Precursor (similar to) transcript=eq;prot=eq;pid=gene09172 - LG5 No
GM09G29430 gma 09 pid=16276612;transcript=eq;prot=eq;name=Glyma09g29430.1 + Gm09 No
GM09G29460 gma 09 pid=16276615;transcript=eq;prot=eq;name=Glyma09g29460.1 + Gm09 No
GM16G33860 gma 16 pid=16303785;transcript=eq;prot=eq;name=Glyma16g33860.1 + Gm16 No
GM16G33870 gma 16 pid=16303786;transcript=eq;prot=eq;name=Glyma16g33870.1 + Gm16 No
LJ0G031490 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_014516;name=LjSGA_014516.1 + LjSGA_014516 No
LJ0G168860 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_053094;name=LjSGA_053094.1 - LjSGA_053094 No
LJ0G224150 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_072969;name=LjSGA_072969.1 - LjSGA_072969 No
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