Gene family  

Sub-families
ORTHO009164 (20 genes in 17 species)
ORTHO013131 (14 genes in 14 species)
ORTHO015171 (10 genes in 9 species)
View all sub-families (7)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (3 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (6 genes)
mdo
Malus domestica (9 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (2 genes)



The gene family HOM001765 has 68 genes in 20 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 68 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G25580 aly name=fgenesh2_kg.1__2592__AT1G23770.1;pid=472638;prot=eq;tid=472638 - scaffold_1 No
AL1G25590 aly name=scaffold_102715.1;pid=889921;prot=eq;tid=921434 - scaffold_1 No
AL2G18240 aly name=scaffold_201857.1;pid=894783;prot=eq;tid=926296 - scaffold_2 No
AL2G18800 aly name=Al_scaffold_0002_1703;pid=877109;prot=eq;tid=908622 + scaffold_2 No
AL3G07410 aly name=scaffold_300831.1;pid=896861;prot=eq;tid=928374 - scaffold_3 No
AL5G24190 aly name=scaffold_502523.1;pid=906819;prot=eq;tid=938332 - scaffold_5 No
AL7G07350 aly name=fgenesh2_kg.7__733__AT4G33780.1;pid=491300;prot=eq;tid=491300 + scaffold_7 No
AT1G23770 ath F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G23780.1); Has 268 Blast hits to 268 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; - 1 No
AT1G23780 ath F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G23770.1); Has 310 Blast hits to 310 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; - 1 No
AT1G69935 ath Encodes a nuclear localized serine-arginine-aspartate-rich protein that acts as a negative regulator of photomorphogenesis.;short hypocotyl in white light1 transcript=eq;prot=eq; - 1 No
AT1G70360 ath F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G23780.1); Has 112 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 112; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; + 1 No
AT4G33780 ath FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 4 No
BD1G69180 bdi pid=Bradi1g69180.1;tid=Bradi1g69180.1;GeneName=Bradi1g69180;transcript=eq;prot=eq - Bd1 No
BD1G69200 bdi F-Box pid=Bradi1g69200.1;tid=Bradi1g69200.1;GeneName=Bradi1g69200;transcript=eq;prot=eq - Bd1 No
CP00005G02950 cpa name=evm.TU.supercontig_5.295;pid=evm.TU.supercontig_5.295;prot=eq;transcript=eq - supercontig_5 No
CP00106G00280 cpa name=evm.TU.supercontig_106.28;pid=evm.TU.supercontig_106.28;prot=eq;transcript=eq - supercontig_106 No
CP35687G00010 cpa name=evm.TU.contig_35687.1;pid=evm.TU.contig_35687.1;prot=eq;transcript=eq - contig_35687 No
FV0G37040 fve F-box protein SKIP22 (probable) transcript=eq;prot=eq;pid=gene27883 - scf0513124 No
FV2G02780 fve hypothetical protein transcript=eq;prot=eq;pid=gene01799 - LG2 No
FV5G31130 fve F-box protein SKIP22 (probable) transcript=eq;prot=eq;pid=gene10647 - LG5 No
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