Gene family  

Sub-families
ORTHO000367 (64 genes in 24 species)
ORTHO076971 (2 genes in 1 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (4 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (5 genes)



The gene family HOM001763 has 68 genes in 24 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 68 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G09040 aly name=fgenesh2_kg.3__902__AT3G08947.1;pid=478201;prot=eq;tid=478201 - scaffold_3 No
AL3G09050 aly name=fgenesh2_kg.3__903__AT3G08947.1;pid=478202;prot=eq;tid=478202 + scaffold_3 No
AL8G18130 aly name=fgenesh2_kg.8__1236__AT5G53480.1;pid=495420;prot=eq;tid=495420 + scaffold_8 No
AT3G08943 ath ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G08947.1); Has 1770 Blast hits to 1697 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 669; Fungi - 578; Plants - 273; Viruses - 0; Other Eukaryotes - 250 (source: NCBI BLink).;ARM repeat superfamily protein transcript=ne;prot=eq; - 3 No
AT3G08947 ath ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G08943.1); Has 1718 Blast hits to 1652 proteins in 220 species: Archae - 0; Bacteria - 1; Metazoa - 645; Fungi - 556; Plants - 267; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink).;ARM repeat superfamily protein transcript=ne;prot=eq; + 3 No
AT5G53480 ath ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, chloroplast, nuclear pore, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G08947.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;ARM repeat superfamily protein transcript=eq;prot=eq; + 5 No
BD1G35630 bdi zinc ion binding (Blast2GO) pid=Bradi1g35630.1;tid=Bradi1g35630.1;GeneName=Bradi1g35630;transcript=eq;prot=eq - Bd1 No
BD1G65390 bdi zinc ion binding (Blast2GO) pid=Bradi1g65390.1;tid=Bradi1g65390.1;GeneName=Bradi1g65390;transcript=eq;prot=eq + Bd1 No
BD4G00730 bdi zinc ion binding (Blast2GO) pid=Bradi4g00730.1;tid=Bradi4g00730.1;GeneName=Bradi4g00730;transcript=eq;prot=eq + Bd4 No
CP00003G01090 cpa name=evm.TU.supercontig_3.109;pid=evm.TU.supercontig_3.109;prot=eq;transcript=eq - supercontig_3 No
CP00015G00090 cpa name=evm.TU.supercontig_15.9;pid=evm.TU.supercontig_15.9;prot=eq;transcript=eq - supercontig_15 Yes
CP00120G00340 cpa name=evm.TU.supercontig_120.34;pid=evm.TU.supercontig_120.34;prot=eq;transcript=eq + supercontig_120 No
CR01G07020 cre name=estExt_gwp_1H.C_10022;pid=128929;prot=eq;tid=128929;transcript=eq - chromosome_1 No
FV5G35470 fve Importin subunit beta-1 (PTAC97) (probable) transcript=eq;prot=eq;pid=gene25107 + LG5 No
FV6G09840 fve Importin subunit beta-1 (PTAC97) (probable) transcript=eq;prot=eq;pid=gene13448 + LG6 No
FV6G09920 fve Importin subunit beta-1 (PTAC97) (probable) transcript=eq;prot=eq;pid=gene13490 - LG6 No
FV7G35940 fve Importin subunit beta-1 (PTAC97) (probable) transcript=eq;prot=eq;pid=gene12830 + LG7 No
GM04G41230 gma 04 pid=16257497;transcript=eq;prot=eq;name=Glyma04g41230.1 + Gm04 No
GM05G36630 gma 05 pid=16260930;transcript=eq;prot=eq;name=Glyma05g36630.1 + Gm05 No
GM06G13620 gma 06 pid=16262827;transcript=eq;prot=eq;name=Glyma06g13620.1 - Gm06 No
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