Gene family  

Sub-families
ORTHO003989 (28 genes in 23 species)
ORTHO005760 (25 genes in 23 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (15 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family HOM001756 has 69 genes in 24 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 69 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G15850 aly name=fgenesh2_kg.4__1092__AT2G31060.2;pid=482032;prot=eq;tid=482032 - scaffold_4 No
AL6G13360 aly name=scaffold_601374.1;pid=909317;prot=eq;tid=940830 + scaffold_6 No
AT2G31060 ath elongation factor family protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein TypA (InterPro:IPR006298), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor family protein (TAIR:AT5G13650.2).;elongation factor family protein transcript=eq;prot=eq; - 2 No
AT5G13650 ath elongation factor family protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), GTP-binding protein TypA (InterPro:IPR006298), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor family protein (TAIR:AT2G31060.2); Has 76334 Blast hits to 67578 proteins in 6162 species: Archae - 1271; Bacteria - 47471; Metazoa - 3896; Fungi - 2458; Plants - 1891; Viruses - 1; Other Eukaryotes - 19346 (source: NCBI BLink).;elongation factor family protein transcript=eq;prot=eq; + 5 No
BD2G50050 bdi GTPase activity (Blast2GO) pid=Bradi2g50050.1;tid=Bradi2g50050.1;GeneName=Bradi2g50050;transcript=eq;prot=eq + Bd2 No
BD3G10530 bdi GTPase activity (Blast2GO) pid=Bradi3g10530.1;tid=Bradi3g10530.1;GeneName=Bradi3g10530;transcript=eq;prot=eq + Bd3 No
CP00050G00010 cpa name=evm.TU.supercontig_50.1;pid=evm.TU.supercontig_50.1;prot=eq;transcript=eq + supercontig_50 No
CP00092G00300 cpa name=evm.TU.supercontig_92.30;pid=evm.TU.supercontig_92.30;prot=eq;transcript=eq + supercontig_92 No
CP00209G00010 cpa name=evm.TU.supercontig_209.1;pid=evm.TU.supercontig_209.1;prot=eq;transcript=eq - supercontig_209 No
CR07G04800 cre name=estExt_gwp_1W.C_500015;pid=139610;prot=eq;tid=139610;transcript=eq - chromosome_7 No
CR13G08880 cre name=e_gwH.44.48.1;pid=106481;prot=eq;tid=106481;transcript=eq - chromosome_13 No
FV6G22260 fve GTP-binding protein typA/bipA homolog (probable) transcript=eq;prot=eq;pid=gene17786 - LG6 No
FV6G22270 fve GTP-binding protein TypA/BipA homolog (probable) transcript=eq;prot=eq;pid=gene17787 - LG6 No
FV6G47990 fve GTP-binding protein TypA/BipA homolog (similar to) transcript=eq;prot=eq;pid=gene25221 - LG6 No
GM02G31480 gma 02 pid=16248927;transcript=eq;prot=eq;name=Glyma02g31480.1 + Gm02 No
GM06G43820 gma 06 pid=16265088;transcript=eq;prot=eq;name=Glyma06g43820.1 + Gm06 No
GM10G17570 gma 10 pid=16279612;transcript=eq;prot=eq;name=Glyma10g17570.1 - Gm10 No
GM12G14080 gma 12 pid=16287428;transcript=eq;prot=eq;name=Glyma12g14080.1 - Gm12 No
LJ5G010810 lja prot=eq;transcript=eq;scaffold=LjT12G17;name=chr5.LjT12G17.40.nc + chr5 No
MD00G178430 mdo transcript=eq;prot=eq;pid=MDP0000280503;tid=MDP0000280503;contig=MDC007646.147 - MDC007646.147 No
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