Gene family  

Sub-families
ORTHO002997 (30 genes in 18 species)
ORTHO012431 (15 genes in 15 species)
ORTHO017881 (7 genes in 5 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (5 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (4 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (8 genes)



The gene family HOM001728 has 70 genes in 20 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 70 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G09000 aly name=scaffold_200920.1;pid=893846;prot=eq;tid=925359 + scaffold_2 No
AL3G02150 aly name=scaffold_300243.1;pid=896273;prot=eq;tid=927786 + scaffold_3 No
AL6G16590 aly name=fgenesh2_kg.6__1665__AT5G16730.1;pid=488531;prot=eq;tid=488531 + scaffold_6 No
AT1G65000 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38060.1); Has 49 Blast hits to 49 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 1 No
AT1G65010 ath Putative role in flower development. Comparison of SALK_061426C to Columbia wild type in normal lighting and under low light of 33 micromoles per meter-squared per second resulted in a trend toward earlier bolting in the mutant under low light (P=0.055) (Ann Stapleton and Patrick Pridgen, 2009, personal communication).;Plant protein of unknown function (DUF827) transcript=eq;prot=eq; + 1 No
AT3G02930 ath Plant protein of unknown function (DUF827); LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT5G16730.1); Has 245110 Blast hits to 119184 proteins in 3857 species: Archae - 3264; Bacteria - 55991; Metazoa - 95493; Fungi - 19215; Plants - 14009; Viruses - 1145; Other Eukaryotes - 55993 (source: NCBI BLink).;Plant protein of unknown function (DUF827) transcript=eq;prot=eq; + 3 No
AT4G27595 ath Plant protein of unknown function (DUF827); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT1G65010.1); Has 310032 Blast hits to 139242 proteins in 3916 species: Archae - 4716; Bacteria - 75781; Metazoa - 114609; Fungi - 21186; Plants - 16814; Viruses - 1394; Other Eukaryotes - 75532 (source: NCBI BLink).;Plant protein of unknown function (DUF827) transcript=eq;prot=eq; - 4 No
AT5G16730 ath LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545), Spectrin/alpha-actinin (InterPro:IPR018159); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT3G02930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Plant protein of unknown function (DUF827) transcript=eq;prot=eq; + 5 No
BD1G00910 bdi pid=Bradi1g00910.1;tid=Bradi1g00910.1;GeneName=Bradi1g00910;transcript=eq;prot=eq + Bd1 No
BD2G37720 bdi ATPase activity, coupled (Blast2GO) pid=Bradi2g37720.1;tid=Bradi2g37720.1;GeneName=Bradi2g37720;transcript=eq;prot=eq - Bd2 No
BD3G34295 bdi pid=Bradi3g34295.1;tid=Bradi3g34295.1;GeneName=Bradi3g34295;transcript=eq;prot=eq + Bd3 No
BD5G20012 bdi pid=Bradi5g20012.1;tid=Bradi5g20012.1;GeneName=Bradi5g20012;transcript=eq;prot=eq + Bd5 No
CP00043G00980 cpa name=evm.TU.supercontig_43.98;pid=evm.TU.supercontig_43.98;prot=eq;transcript=eq + supercontig_43 No
CP00055G00750 cpa name=evm.TU.supercontig_55.75;pid=evm.TU.supercontig_55.75;prot=eq;transcript=eq + supercontig_55 No
FV0G22120 fve Cingulin-like protein 1 (probable) transcript=eq;prot=eq;pid=gene16242 + scf0513168 No
FV7G33660 fve Interactor of constitutive active ROPs 2, chloroplastic, Precursor (probable) transcript=eq;prot=eq;pid=gene12560 + LG7 No
GM01G44390 gma 01 pid=16246287;transcript=eq;prot=eq;name=Glyma01g44390.1 - Gm01 No
GM11G01130 gma 11 pid=16282252;transcript=eq;prot=eq;name=Glyma11g01130.1 + Gm11 No
GM11G11580 gma 11 pid=16283520;transcript=eq;prot=eq;name=Glyma11g11580.1 - Gm11 No
GM12G01940 gma 12 pid=16286040;transcript=eq;prot=eq;name=Glyma12g01940.1 + Gm12 No
<< previous
1 | 2 | 3 | 4 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier