Gene family  

Sub-families
ORTHO000891 (45 genes in 24 species)
ORTHO035816 (3 genes in 1 species)
ORTHO036070 (3 genes in 1 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (8 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (10 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (4 genes)



The gene family HOM001726 has 70 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 70 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G02430 aly name=scaffold_3400002.1;pid=920545;prot=eq;tid=952058 - scaffold_34 No
AL0G09450 aly name=scaffold_58200001.1;pid=920799;prot=eq;tid=952312 + scaffold_582 No
AL3G38930 aly name=Al_scaffold_0003_3767;pid=875126;prot=eq;tid=906639 + scaffold_3 No
AL5G20830 aly name=fgenesh1_pm.C_scaffold_5001223;pid=323679;prot=eq;tid=323679 - scaffold_5 No
AL7G04630 aly name=fgenesh2_kg.7__451__AT4G36130.1;pid=491018;prot=eq;tid=491018 - scaffold_7 No
AL8G05490 aly name=fgenesh1_pg.C_scaffold_8000433;pid=356646;prot=eq;tid=356646 + scaffold_8 No
AL8G05500 aly name=Al_scaffold_0008_537;pid=884273;prot=eq;tid=915786 + scaffold_8 No
AL8G05510 aly name=Al_scaffold_0008_538;pid=884274;prot=eq;tid=915787 + scaffold_8 No
AT2G18020 ath embryo defective 2296 (EMB2296); FUNCTIONS IN: structural constituent of ribosome, protein binding; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: in 7 components; EXPRESSED IN: male gametophyte, guard cell, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein L2 (InterPro:IPR002171), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein L2, C-terminal (InterPro:IPR022669), Ribosomal protein L2, domain 3 (InterPro:IPR014726), Ribosomal Proteins L2, RNA binding domain (InterPro:IPR022666), Ribosomal protein L2, conserved site (InterPro:IPR022671); BEST Arabidopsis thaliana protein match is: Ribosomal protein L2 family (TAIR:AT4G36130.1); Has 10660 Blast hits to 10653 proteins in 3642 species: Archae - 317; Bacteria - 5675; Metazoa - 457; Fungi - 292; Plants - 1219; Viruses - 0; Other Eukaryotes - 2700 (source: NCBI BLink).;Ribosomal protein L2 family transcript=eq;prot=eq; + 2 No
AT3G51190 ath Ribosomal protein L2 family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein L2 (InterPro:IPR002171), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein L2, C-terminal (InterPro:IPR022669), Ribosomal protein L2, domain 3 (InterPro:IPR014726), Ribosomal Proteins L2, RNA binding domain (InterPro:IPR022666), Ribosomal protein L2, conserved site (InterPro:IPR022671); BEST Arabidopsis thaliana protein match is: Ribosomal protein L2 family (TAIR:AT4G36130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Ribosomal protein L2 family transcript=eq;prot=eq; - 3 No
AT4G36130 ath Ribosomal protein L2 family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, plasma membrane, vacuole; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein L2 (InterPro:IPR002171), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein L2, C-terminal (InterPro:IPR022669), Ribosomal protein L2, domain 3 (InterPro:IPR014726), Ribosomal Proteins L2, RNA binding domain (InterPro:IPR022666), Ribosomal protein L2, conserved site (InterPro:IPR022671); BEST Arabidopsis thaliana protein match is: Ribosomal protein L2 family (TAIR:AT2G18020.1); Has 10610 Blast hits to 10603 proteins in 3612 species: Archae - 317; Bacteria - 5622; Metazoa - 462; Fungi - 292; Plants - 1215; Viruses - 0; Other Eukaryotes - 2702 (source: NCBI BLink).;Ribosomal protein L2 family transcript=eq;prot=eq; + 4 No
BD1G00867 bdi pid=Bradi1g00867.1;tid=Bradi1g00867.1;GeneName=Bradi1g00867;transcript=eq;prot=eq + Bd1 No
BD4G04120 bdi pid=Bradi4g04120.2;tid=Bradi4g04120.2;GeneName=Bradi4g04120;transcript=eq;prot=eq + Bd4 No
CP00006G02280 cpa name=evm.TU.supercontig_6.229;pid=evm.TU.supercontig_6.229;prot=eq;transcript=eq - supercontig_6 No
CP00025G01760 cpa name=evm.TU.supercontig_25.176;pid=evm.TU.supercontig_25.176;prot=eq;transcript=eq - supercontig_25 No
CR12G10950 cre name=fgenesh2_pg.C_scaffold_18000072;pid=172406;prot=eq;tid=172406;transcript=eq + chromosome_12 No
FV3G09750 fve 60S ribosomal protein L8-3 (similar to) transcript=eq;prot=eq;pid=gene20127 - LG3 No
FV4G05260 fve 60S ribosomal protein L8-3 (similar to) transcript=eq;prot=eq;pid=gene17157 - LG4 No
GM01G37250 gma 01 pid=16245458;transcript=eq;prot=eq;name=Glyma01g37250.1 + Gm01 No
GM02G05540 gma 02 pid=16247083;transcript=eq;prot=eq;name=Glyma02g05540.1 + Gm02 No
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