Gene family  

Sub-families
ORTHO002842 (31 genes in 23 species)
ORTHO007094 (23 genes in 17 species)
ORTHO025748 (4 genes in 1 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (8 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (2 genes)



The gene family HOM001708 has 70 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 70 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G34990 aly name=scaffold_103751.1;pid=890957;prot=eq;tid=922470 + scaffold_1 No
AL3G09720 aly name=fgenesh1_pm.C_scaffold_3000775;pid=317759;prot=eq;tid=317759 - scaffold_3 No
AL4G17190 aly name=scaffold_401766.1;pid=902265;prot=eq;tid=933778 + scaffold_4 No
AL6G34450 aly name=scaffold_603563.1;pid=911506;prot=eq;tid=943019 + scaffold_6 No
AL8G07910 aly name=fgenesh2_kg.8__547__AT5G42870.1;pid=494731;prot=eq;tid=494731 + scaffold_8 No
AL8G19680 aly name=scaffold_801971.1;pid=918571;prot=eq;tid=950084 - scaffold_8 No
AT3G09560 ath Lipin family protein; CONTAINS InterPro DOMAIN/s: LNS2, Lipin/Ned1/Smp2 (InterPro:IPR013209), Lipin, N-terminal conserved region (InterPro:IPR007651); BEST Arabidopsis thaliana protein match is: phosphatidic acid phosphohydrolase 2 (TAIR:AT5G42870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Lipin family protein transcript=eq;prot=eq; - 3 No
AT5G42870 ath phosphatidic acid phosphohydrolase 2 (PAH2); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: cellular response to phosphate starvation, lipid metabolic process; LOCATED IN: apoplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LNS2, Lipin/Ned1/Smp2 (InterPro:IPR013209), Lipin, N-terminal conserved region (InterPro:IPR007651); BEST Arabidopsis thaliana protein match is: Lipin family protein (TAIR:AT3G09560.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;phosphatidic acid phosphohydrolase 2 transcript=eq;prot=eq; - 5 No
BD2G23040 bdi ATPase activity, coupled (Blast2GO) pid=Bradi2g23040.1;tid=Bradi2g23040.1;GeneName=Bradi2g23040;transcript=eq;prot=eq + Bd2 No
BD4G13710 bdi motor activity (Blast2GO) pid=Bradi4g13710.1;tid=Bradi4g13710.1;GeneName=Bradi4g13710;transcript=eq;prot=eq + Bd4 No
CP00049G00060 cpa name=evm.TU.supercontig_49.6;pid=evm.TU.supercontig_49.6;prot=eq;transcript=eq + supercontig_49 No
CP00114G00150 cpa name=evm.TU.supercontig_114.15;pid=evm.TU.supercontig_114.15;prot=eq;transcript=eq - supercontig_114 No
CR12G04710 cre name=e_gwH.11.375.1;pid=99951;prot=eq;tid=99951;transcript=eq - chromosome_12 No
FV2G33980 fve Lipin-2 (probable) transcript=eq;prot=eq;pid=gene09086 - LG2 No
FV6G14100 fve Lipin-2 (probable) transcript=eq;prot=eq;pid=gene18173 - LG6 No
GM04G04060 gma 04 pid=16254794;transcript=eq;prot=eq;name=Glyma04g04060.1 + Gm04 No
GM06G04230 gma 06 pid=16261663;transcript=eq;prot=eq;name=Glyma06g04230.1 + Gm06 No
GM10G05320 gma 10 pid=16278646;transcript=eq;prot=eq;name=Glyma10g05320.1 - Gm10 No
GM13G19730 gma 13 pid=16290870;transcript=eq;prot=eq;name=Glyma13g19730.1 - Gm13 No
GM14G09040 gma 14 pid=16294901;transcript=eq;prot=eq;name=Glyma14g09040.1 + Gm14 No
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