Gene family 
- Id
- HOM001708
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO002842 (31 genes in 23 species)
ORTHO007094 (23 genes in 17 species)
ORTHO025748 (4 genes in 1 species)
View all sub-families (5)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (6 genes)
- ath
- Arabidopsis thaliana (2 genes)
- bdi
- Brachypodium distachyon (2 genes)
- cpa
- Carica papaya (2 genes)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (2 genes)
- gma
- Glycine max (7 genes)
- lja
- Lotus japonicus (4 genes)
- mdo
- Malus domestica (8 genes)
- mes
- Manihot esculenta (3 genes)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (3 genes)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (3 genes)
- osaindica
- Oryza sativa ssp. indica (3 genes)
- ota
- Ostreococcus tauri (1 gene)
- ppa
- Physcomitrella patens (2 genes)
- ptr
- Populus trichocarpa (4 genes)
- rco
- Ricinus communis (2 genes)
- sbi
- Sorghum bicolor (2 genes)
- smo
- Selaginella moellendorffii (2 genes)
- tca
- Theobroma cacao (2 genes)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (4 genes)
- zma
- Zea mays (2 genes)
The gene family HOM001708 has 70 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM001708
Page 1 of 4, showing 20 records out of 70 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G34990 | aly | name=scaffold_103751.1;pid=890957;prot=eq;tid=922470 | + | scaffold_1 | No | |
| AL3G09720 | aly | name=fgenesh1_pm.C_scaffold_3000775;pid=317759;prot=eq;tid=317759 | - | scaffold_3 | No | |
| AL4G17190 | aly | name=scaffold_401766.1;pid=902265;prot=eq;tid=933778 | + | scaffold_4 | No | |
| AL6G34450 | aly | name=scaffold_603563.1;pid=911506;prot=eq;tid=943019 | + | scaffold_6 | No | |
| AL8G07910 | aly | name=fgenesh2_kg.8__547__AT5G42870.1;pid=494731;prot=eq;tid=494731 | + | scaffold_8 | No | |
| AL8G19680 | aly | name=scaffold_801971.1;pid=918571;prot=eq;tid=950084 | - | scaffold_8 | No | |
| AT3G09560 | ath | Lipin family protein; CONTAINS InterPro DOMAIN/s: LNS2, Lipin/Ned1/Smp2 (InterPro:IPR013209), Lipin, N-terminal conserved region (InterPro:IPR007651); BEST Arabidopsis thaliana protein match is: phosphatidic acid phosphohydrolase 2 (TAIR:AT5G42870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Lipin family protein | transcript=eq;prot=eq; | - | 3 | No |
| AT5G42870 | ath | phosphatidic acid phosphohydrolase 2 (PAH2); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: cellular response to phosphate starvation, lipid metabolic process; LOCATED IN: apoplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LNS2, Lipin/Ned1/Smp2 (InterPro:IPR013209), Lipin, N-terminal conserved region (InterPro:IPR007651); BEST Arabidopsis thaliana protein match is: Lipin family protein (TAIR:AT3G09560.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;phosphatidic acid phosphohydrolase 2 | transcript=eq;prot=eq; | - | 5 | No |
| BD2G23040 | bdi | ATPase activity, coupled (Blast2GO) | pid=Bradi2g23040.1;tid=Bradi2g23040.1;GeneName=Bradi2g23040;transcript=eq;prot=eq | + | Bd2 | No |
| BD4G13710 | bdi | motor activity (Blast2GO) | pid=Bradi4g13710.1;tid=Bradi4g13710.1;GeneName=Bradi4g13710;transcript=eq;prot=eq | + | Bd4 | No |
| CP00049G00060 | cpa | name=evm.TU.supercontig_49.6;pid=evm.TU.supercontig_49.6;prot=eq;transcript=eq | + | supercontig_49 | No | |
| CP00114G00150 | cpa | name=evm.TU.supercontig_114.15;pid=evm.TU.supercontig_114.15;prot=eq;transcript=eq | - | supercontig_114 | No | |
| CR12G04710 | cre | name=e_gwH.11.375.1;pid=99951;prot=eq;tid=99951;transcript=eq | - | chromosome_12 | No | |
| FV2G33980 | fve | Lipin-2 (probable) | transcript=eq;prot=eq;pid=gene09086 | - | LG2 | No |
| FV6G14100 | fve | Lipin-2 (probable) | transcript=eq;prot=eq;pid=gene18173 | - | LG6 | No |
| GM04G04060 | gma | 04 | pid=16254794;transcript=eq;prot=eq;name=Glyma04g04060.1 | + | Gm04 | No |
| GM06G04230 | gma | 06 | pid=16261663;transcript=eq;prot=eq;name=Glyma06g04230.1 | + | Gm06 | No |
| GM10G05320 | gma | 10 | pid=16278646;transcript=eq;prot=eq;name=Glyma10g05320.1 | - | Gm10 | No |
| GM13G19730 | gma | 13 | pid=16290870;transcript=eq;prot=eq;name=Glyma13g19730.1 | - | Gm13 | No |
| GM14G09040 | gma | 14 | pid=16294901;transcript=eq;prot=eq;name=Glyma14g09040.1 | + | Gm14 | No |