Gene family  

Sub-families
ORTHO002643 (31 genes in 22 species)
ORTHO018325 (7 genes in 5 species)
ORTHO055626 (2 genes in 1 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (3 genes)
mtr
Medicago truncatula (12 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (3 genes)



The gene family HOM001692 has 70 genes in 22 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 70 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G38920 aly name=scaffold_104145.1;pid=891351;prot=eq;tid=922864 - scaffold_1 No
AT1G43710 ath embryo defective 1075 (emb1075); FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity; INVOLVED IN: cellular amino acid metabolic process, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal-phosphate binding site (InterPro:IPR021115), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase 2 (TAIR:AT1G65960.1); Has 3259 Blast hits to 3251 proteins in 995 species: Archae - 187; Bacteria - 1878; Metazoa - 518; Fungi - 211; Plants - 249; Viruses - 11; Other Eukaryotes - 205 (source: NCBI BLink).;Pyridoxal phosphate (PLP)-dependent transferases superfamily protein transcript=eq;prot=eq; - 1 No
BD2G41817 bdi pid=Bradi2g41817.1;tid=Bradi2g41817.1;GeneName=Bradi2g41817;transcript=eq;prot=eq - Bd2 No
BD3G45260 bdi glutamate decarboxylase activity (Blast2GO) pid=Bradi3g45260.1;tid=Bradi3g45260.1;GeneName=Bradi3g45260;transcript=eq;prot=eq + Bd3 No
BD5G09817 bdi pid=Bradi5g09817.1;tid=Bradi5g09817.1;GeneName=Bradi5g09817;transcript=eq;prot=eq + Bd5 No
CP00021G01800 cpa name=evm.TU.supercontig_21.180;pid=evm.TU.supercontig_21.180;prot=eq;transcript=eq + supercontig_21 No
CR01G07900 cre name=gwH.1.129.1;pid=40158;prot=eq;tid=40158;transcript=eq + chromosome_1 No
FV0G21490 fve Histidine decarboxylase (HDC) (probable) transcript=eq;prot=eq;pid=gene16166 - scf0513168 No
FV2G22450 fve Histidine decarboxylase (HDC) (similar to) transcript=eq;prot=eq;pid=gene32644 - LG2 No
GM08G08130 gma 08 pid=16270373;transcript=eq;prot=eq;name=Glyma08g08130.1 + Gm08 No
GM08G19360 gma 08 pid=16271717;transcript=eq;prot=eq;name=Glyma08g19360.1 + Gm08 No
GM10G37050 gma 10 pid=16281250;transcript=eq;prot=eq;name=Glyma10g37050.1 - Gm10 No
GM10G37060 gma 10 pid=16281251;transcript=eq;prot=eq;name=Glyma10g37060.1 - Gm10 No
GM10G37180 gma 10 pid=16281266;transcript=eq;prot=eq;name=Glyma10g37180.1 + Gm10 No
GM15G05630 gma 15 pid=16297753;transcript=eq;prot=eq;name=Glyma15g05630.1 - Gm15 No
GM20G30570 gma 20 pid=16317391;transcript=eq;prot=eq;name=Glyma20g30570.1 + Gm20 No
LJ0G038970 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_016297;name=LjSGA_016297.1 + LjSGA_016297 No
LJ0G059390 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_021314;name=LjSGA_021314.1 + LjSGA_021314 No
LJ0G154460 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_048445;name=LjSGA_048445.1 - LjSGA_048445 No
LJ0G265800 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_089308;name=LjSGA_089308.1 + LjSGA_089308 No
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