Gene family  

Sub-families
ORTHO004609 (27 genes in 25 species)
ORTHO007775 (22 genes in 18 species)
ORTHO015865 (9 genes in 8 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (4 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (8 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (2 genes)



The gene family HOM001684 has 71 genes in 25 species (12 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 71 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G02240 aly name=scaffold_300252.1;pid=896282;prot=eq;tid=927795 + scaffold_3 No
AL3G02270 aly name=fgenesh2_kg.3__249__AT3G03010.1;pid=477548;prot=eq;tid=477548 - scaffold_3 No
AL6G11440 aly name=scaffold_601185.1;pid=909128;prot=eq;tid=940641 + scaffold_6 Yes
AL6G16730 aly name=fgenesh2_kg.6__1683__AT5G16870.1;pid=488549;prot=eq;tid=488549 - scaffold_6 No
AL7G08440 aly name=fgenesh2_kg.7__839__AT4G32900.1;pid=491406;prot=eq;tid=491406 + scaffold_7 No
AT3G03010 ath Peptidyl-tRNA hydrolase II (PTH2) family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase II (PTH2) family protein (TAIR:AT5G16870.1); Has 884 Blast hits to 884 proteins in 331 species: Archae - 257; Bacteria - 13; Metazoa - 196; Fungi - 135; Plants - 86; Viruses - 8; Other Eukaryotes - 189 (source: NCBI BLink).;Peptidyl-tRNA hydrolase II (PTH2) family protein transcript=eq;prot=eq; - 3 No
AT4G32900 ath Peptidyl-tRNA hydrolase II (PTH2) family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase II (PTH2) family protein (TAIR:AT5G16870.1); Has 933 Blast hits to 933 proteins in 345 species: Archae - 258; Bacteria - 52; Metazoa - 200; Fungi - 129; Plants - 88; Viruses - 8; Other Eukaryotes - 198 (source: NCBI BLink).;Peptidyl-tRNA hydrolase II (PTH2) family protein transcript=eq;prot=eq; - 4 No
AT5G11630 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 90 Blast hits to 90 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 5 Yes
AT5G16870 ath Peptidyl-tRNA hydrolase II (PTH2) family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase II (PTH2) family protein (TAIR:AT3G03010.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Peptidyl-tRNA hydrolase II (PTH2) family protein transcript=eq;prot=eq; - 5 No
BD2G19490 bdi aminoacyl-tRNA hydrolase activity (Blast2GO) pid=Bradi2g19490.1;tid=Bradi2g19490.1;GeneName=Bradi2g19490;transcript=eq;prot=eq + Bd2 No
BD5G24420 bdi aminoacyl-tRNA hydrolase activity (Blast2GO) pid=Bradi5g24420.1;tid=Bradi5g24420.1;GeneName=Bradi5g24420;transcript=eq;prot=eq + Bd5 No
CP00043G00790 cpa name=evm.TU.supercontig_43.79;pid=evm.TU.supercontig_43.79;prot=eq;transcript=eq + supercontig_43 No
CP00078G00060 cpa name=evm.TU.supercontig_78.6;pid=evm.TU.supercontig_78.6;prot=eq;transcript=eq + supercontig_78 No
CR05G00010 cre name=e_gwH.90.9.1;pid=108727;prot=eq;tid=108727;transcript=eq - chromosome_5 No
FV2G34970 fve UPF0182 protein SCO5204 (probable) transcript=eq;prot=eq;pid=gene08989 - LG2 Yes
FV2G34980 fve Peptidyl-tRNA hydrolase 2, mitochondrial (PTH 2), Precursor (probable) transcript=eq;prot=eq;pid=gene08988 - LG2 No
FV6G50880 fve Acyl-[acyl-carrier-protein] synthetase (probable) transcript=eq;prot=eq;pid=gene22712 - LG6 Yes
FV7G33790 fve Peptidyl-tRNA hydrolase 2, mitochondrial (PTH 2), Precursor (similar to) transcript=eq;prot=eq;pid=gene12573 - LG7 No
GM04G08960 gma 04 pid=16255361;transcript=eq;prot=eq;name=Glyma04g08960.1 + Gm04 No
GM04G08980 gma 04 pid=16255363;transcript=eq;prot=eq;name=Glyma04g08980.1 + Gm04 Yes
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