Gene family  

Sub-families
ORTHO004352 (27 genes in 25 species)
ORTHO051597 (2 genes in 1 species)
ORTHO053880 (2 genes in 2 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (4 genes)
gma
Glycine max (3 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (9 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (2 genes)



The gene family HOM001656 has 71 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 71 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G05210 aly name=scaffold_300579.1;pid=896609;prot=eq;tid=928122 - scaffold_3 No
AL3G05240 aly name=scaffold_300582.1;pid=896612;prot=eq;tid=928125 - scaffold_3 No
AL7G04040 aly name=scaffold_700430.1;pid=912688;prot=eq;tid=944201 - scaffold_7 No
AT3G05350 ath Metallopeptidase M24 family protein; FUNCTIONS IN: hydrolase activity, aminopeptidase activity; INVOLVED IN: proteolysis, cellular process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Creatinase (InterPro:IPR000587); BEST Arabidopsis thaliana protein match is: aminopeptidase P1 (TAIR:AT4G36760.1); Has 11788 Blast hits to 11217 proteins in 2602 species: Archae - 275; Bacteria - 7526; Metazoa - 334; Fungi - 310; Plants - 154; Viruses - 0; Other Eukaryotes - 3189 (source: NCBI BLink).;Metallopeptidase M24 family protein transcript=eq;prot=eq; - 3 No
AT4G36760 ath Arabidopsis aminopeptidase P1;aminopeptidase P1 transcript=eq;prot=eq; + 4 No
BD1G54327 bdi pid=Bradi1g54327.1;tid=Bradi1g54327.1;GeneName=Bradi1g54327;transcript=eq;prot=eq + Bd1 No
BD4G16980 bdi aminopeptidase activity (Blast2GO) pid=Bradi4g16980.1;tid=Bradi4g16980.1;GeneName=Bradi4g16980;transcript=eq;prot=eq + Bd4 No
CP00048G00580 cpa name=evm.TU.supercontig_48.58;pid=evm.TU.supercontig_48.58;prot=eq;transcript=eq - supercontig_48 No
CP00158G00130 cpa name=evm.TU.supercontig_158.13;pid=evm.TU.supercontig_158.13;prot=eq;transcript=eq - supercontig_158 No
CR09G04740 cre name=pasa_Sanger_mRNA32741;pid=398861;prot=eq;tid=423258;transcript=eq + chromosome_9 No
FV0G48230 fve Xaa-Pro aminopeptidase 1 (sAmp) (similar to) transcript=eq;prot=eq;pid=gene20744 - scf0513040 No
FV4G12120 fve Xaa-Pro aminopeptidase 1 (sAmp) (probable) transcript=eq;prot=eq;pid=gene06771 - LG4 No
FV5G38010 fve Xaa-Pro aminopeptidase 1 (sAmp) (probable) transcript=eq;prot=eq;pid=gene29534 - LG5 No
FV6G05580 fve Xaa-Pro aminopeptidase 1 (sAmp) (probable) transcript=eq;prot=eq;pid=gene22531 + LG6 No
GM01G38410 gma 01 pid=16245598;transcript=eq;prot=eq;name=Glyma01g38410.1 + Gm01 No
GM11G06900 gma 11 pid=16282944;transcript=eq;prot=eq;name=Glyma11g06900.1 - Gm11 No
GM19G42330 gma 19 pid=16314673;transcript=eq;prot=eq;name=Glyma19g42330.1 + Gm19 No
LJ0G005450 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_005539;name=LjSGA_005539.3 + LjSGA_005539 No
LJ0G089780 lja prot=eq;transcript=eq;scaffold=LjSGA_029393;name=LjSGA_029393.2 + LjSGA_029393 No
MD00G138890 mdo transcript=eq;prot=eq;pid=MDP0000181420;tid=MDP0000181420;contig=MDC005910.303 - MDC005910.303 No
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