Gene family 
- Id
- HOM001647
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO006426 (24 genes in 23 species)
ORTHO009419 (20 genes in 18 species)
ORTHO011965 (16 genes in 14 species)
View all sub-families (6)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (3 genes)
- ath
- Arabidopsis thaliana (4 genes)
- bdi
- Brachypodium distachyon (3 genes)
- cpa
- Carica papaya (3 genes)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (3 genes)
- gma
- Glycine max (5 genes)
- lja
- Lotus japonicus (2 genes)
- mdo
- Malus domestica (5 genes)
- mes
- Manihot esculenta (4 genes)
- mrcc299
- Micromonas sp. RCC299 (3 genes)
- mtr
- Medicago truncatula (2 genes)
- olu
- Ostreococcus lucimarinus (3 genes)
- osa
- Oryza sativa ssp. japonica (3 genes)
- osaindica
- Oryza sativa ssp. indica (3 genes)
- ota
- Ostreococcus tauri (3 genes)
- ppa
- Physcomitrella patens (2 genes)
- ptr
- Populus trichocarpa (3 genes)
- rco
- Ricinus communis (3 genes)
- sbi
- Sorghum bicolor (3 genes)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (3 genes)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (3 genes)
- zma
- Zea mays (3 genes)
The gene family HOM001647 has 72 genes in 25 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM001647
Page 1 of 4, showing 20 records out of 72 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL3G15870 | aly | name=fgenesh1_pm.C_scaffold_3001299;pid=318283;prot=eq;tid=318283 | + | scaffold_3 | No | |
| AL4G36340 | aly | name=fgenesh2_kg.4__3062__AT2G48100.3;pid=484002;prot=eq;tid=484002 | + | scaffold_4 | No | |
| AL5G07200 | aly | name=Al_scaffold_0005_684;pid=865205;prot=eq;tid=896718 | + | scaffold_5 | No | |
| AT2G48100 | ath | Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1569 Blast hits to 1569 proteins in 234 species: Archae - 0; Bacteria - 15; Metazoa - 734; Fungi - 438; Plants - 246; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).;Exonuclease family protein | transcript=eq;prot=eq; | + | 2 | No |
| AT3G15080 | ath | Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1777 Blast hits to 1777 proteins in 250 species: Archae - 0; Bacteria - 24; Metazoa - 732; Fungi - 619; Plants - 217; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein | transcript=eq;prot=eq; | + | 3 | No |
| AT3G27970 | ath | Exonuclease family protein; FUNCTIONS IN: zinc ion binding, exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1318 Blast hits to 1314 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 581; Fungi - 387; Plants - 223; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).;Exonuclease family protein | transcript=eq;prot=eq; | + | 3 | No |
| AT5G40310 | ath | Exonuclease family protein; FUNCTIONS IN: zinc ion binding, exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT3G27970.1); Has 1160 Blast hits to 1160 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 448; Fungi - 364; Plants - 225; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).;Exonuclease family protein | transcript=eq;prot=eq; | - | 5 | No |
| BD2G00677 | bdi | pid=Bradi2g00677.1;tid=Bradi2g00677.1;GeneName=Bradi2g00677;transcript=eq;prot=eq | - | Bd2 | No | |
| BD3G35110 | bdi | single-stranded DNA specific 3'-5' exodeoxyribonuclease activity (Blast2GO) | pid=Bradi3g35110.1;tid=Bradi3g35110.1;GeneName=Bradi3g35110;transcript=eq;prot=eq | + | Bd3 | No |
| BD3G52960 | bdi | 3'-5'-exoribonuclease activity (Blast2GO) | pid=Bradi3g52960.1;tid=Bradi3g52960.1;GeneName=Bradi3g52960;transcript=eq;prot=eq | + | Bd3 | No |
| CP00039G00770 | cpa | name=evm.TU.supercontig_39.77;pid=evm.TU.supercontig_39.77;prot=eq;transcript=eq | + | supercontig_39 | No | |
| CP00080G00900 | cpa | name=evm.TU.supercontig_80.90;pid=evm.TU.supercontig_80.90;prot=eq;transcript=eq | + | supercontig_80 | No | |
| CP32496G00010 | cpa | name=evm.TU.contig_32496.1;pid=evm.TU.contig_32496.1;prot=eq;transcript=eq | - | contig_32496 | No | |
| CR11G02730 | cre | name=e_gwW.33.46.1;pid=120367;prot=eq;tid=120367;transcript=eq | - | chromosome_11 | No | |
| FV0G38760 | fve | RNA exonuclease 4 (hPMC2) (probable) | transcript=eq;prot=eq;pid=gene28408 | - | scf0513124 | No |
| FV3G06280 | fve | RNA exonuclease 4 (probable) | transcript=eq;prot=eq;pid=gene30436 | - | LG3 | No |
| FV3G17830 | fve | RNA exonuclease 4 (probable) | transcript=eq;prot=eq;pid=gene27203 | + | LG3 | No |
| GM12G35630 | gma | 12 | pid=16288998;transcript=eq;prot=eq;name=Glyma12g35630.1 | - | Gm12 | No |
| GM13G34800 | gma | 13 | pid=16292637;transcript=eq;prot=eq;name=Glyma13g34800.1 | + | Gm13 | No |
| GM13G42740 | gma | 13 | pid=16293559;transcript=eq;prot=eq;name=Glyma13g42740.1 | - | Gm13 | No |