Gene family  

Sub-families
ORTHO006426 (24 genes in 23 species)
ORTHO009419 (20 genes in 18 species)
ORTHO011965 (16 genes in 14 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (5 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (3 genes)



The gene family HOM001647 has 72 genes in 25 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 72 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G15870 aly name=fgenesh1_pm.C_scaffold_3001299;pid=318283;prot=eq;tid=318283 + scaffold_3 No
AL4G36340 aly name=fgenesh2_kg.4__3062__AT2G48100.3;pid=484002;prot=eq;tid=484002 + scaffold_4 No
AL5G07200 aly name=Al_scaffold_0005_684;pid=865205;prot=eq;tid=896718 + scaffold_5 No
AT2G48100 ath Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1569 Blast hits to 1569 proteins in 234 species: Archae - 0; Bacteria - 15; Metazoa - 734; Fungi - 438; Plants - 246; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).;Exonuclease family protein transcript=eq;prot=eq; + 2 No
AT3G15080 ath Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1777 Blast hits to 1777 proteins in 250 species: Archae - 0; Bacteria - 24; Metazoa - 732; Fungi - 619; Plants - 217; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; + 3 No
AT3G27970 ath Exonuclease family protein; FUNCTIONS IN: zinc ion binding, exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1318 Blast hits to 1314 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 581; Fungi - 387; Plants - 223; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).;Exonuclease family protein transcript=eq;prot=eq; + 3 No
AT5G40310 ath Exonuclease family protein; FUNCTIONS IN: zinc ion binding, exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT3G27970.1); Has 1160 Blast hits to 1160 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 448; Fungi - 364; Plants - 225; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).;Exonuclease family protein transcript=eq;prot=eq; - 5 No
BD2G00677 bdi pid=Bradi2g00677.1;tid=Bradi2g00677.1;GeneName=Bradi2g00677;transcript=eq;prot=eq - Bd2 No
BD3G35110 bdi single-stranded DNA specific 3'-5' exodeoxyribonuclease activity (Blast2GO) pid=Bradi3g35110.1;tid=Bradi3g35110.1;GeneName=Bradi3g35110;transcript=eq;prot=eq + Bd3 No
BD3G52960 bdi 3'-5'-exoribonuclease activity (Blast2GO) pid=Bradi3g52960.1;tid=Bradi3g52960.1;GeneName=Bradi3g52960;transcript=eq;prot=eq + Bd3 No
CP00039G00770 cpa name=evm.TU.supercontig_39.77;pid=evm.TU.supercontig_39.77;prot=eq;transcript=eq + supercontig_39 No
CP00080G00900 cpa name=evm.TU.supercontig_80.90;pid=evm.TU.supercontig_80.90;prot=eq;transcript=eq + supercontig_80 No
CP32496G00010 cpa name=evm.TU.contig_32496.1;pid=evm.TU.contig_32496.1;prot=eq;transcript=eq - contig_32496 No
CR11G02730 cre name=e_gwW.33.46.1;pid=120367;prot=eq;tid=120367;transcript=eq - chromosome_11 No
FV0G38760 fve RNA exonuclease 4 (hPMC2) (probable) transcript=eq;prot=eq;pid=gene28408 - scf0513124 No
FV3G06280 fve RNA exonuclease 4 (probable) transcript=eq;prot=eq;pid=gene30436 - LG3 No
FV3G17830 fve RNA exonuclease 4 (probable) transcript=eq;prot=eq;pid=gene27203 + LG3 No
GM12G35630 gma 12 pid=16288998;transcript=eq;prot=eq;name=Glyma12g35630.1 - Gm12 No
GM13G34800 gma 13 pid=16292637;transcript=eq;prot=eq;name=Glyma13g34800.1 + Gm13 No
GM13G42740 gma 13 pid=16293559;transcript=eq;prot=eq;name=Glyma13g42740.1 - Gm13 No
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