Gene family  

Sub-families
ORTHO001024 (43 genes in 24 species)
ORTHO007398 (23 genes in 18 species)
ORTHO047689 (2 genes in 2 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (4 genes)
gma
Glycine max (8 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (3 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (4 genes)



The gene family HOM001608 has 73 genes in 24 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 73 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G40090 aly name=scaffold_304247.1;pid=900277;prot=eq;tid=931790 + scaffold_3 No
AL7G06490 aly name=fgenesh2_kg.7__646__AT4G34460.1;pid=491213;prot=eq;tid=491213 + scaffold_7 No
AL7G06500 aly name=fgenesh2_kg.7__650__AT4G34450.1;pid=491217;prot=eq;tid=491217 - scaffold_7 No
AT2G16200 ath structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, Golgi-associated vesicle; CONTAINS InterPro DOMAIN/s: Coatomer, gamma subunit , appendage (InterPro:IPR014863), Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain (InterPro:IPR015873), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028); BEST Arabidopsis thaliana protein match is: coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (TAIR:AT4G34450.1).;structural molecules transcript=eq;prot=eq; + 2 No
AT4G34450 ath coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative; FUNCTIONS IN: clathrin binding, structural molecule activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Coatomer, gamma subunit, appendage, Ig-like subdomain (InterPro:IPR013040), Armadillo-like helical (InterPro:IPR011989), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Coatomer, gamma subunit (InterPro:IPR017106), Coatomer, gamma subunit , appendage (InterPro:IPR014863), Armadillo-type fold (InterPro:IPR016024), Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain (InterPro:IPR015873), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: structural molecules (TAIR:AT2G16200.1); Has 1647 Blast hits to 1638 proteins in 222 species: Archae - 2; Bacteria - 2; Metazoa - 707; Fungi - 446; Plants - 176; Viruses - 0; Other Eukaryotes - 314 (source: NCBI BLink).;coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative transcript=eq;prot=eq; + 4 No
AT4G34460 ath Encodes the heterotrimeric G-protein beta subunit and is involved in organ shape. A significant fraction of the protein is found in the ER. Mutants carrying null alleles express similar fruit phenotypes, as seen in er plants, but differ from er in that the stem is only slightly shorter than that in the wild type, the pedicel is slightly longer than that in the wild type, and the leaves are rounder than those in er mutants. Gene is expressed in all tissues examined, with highest expression level found in siliques. It is involved in resistance to Plectosphaerella cucumerina. The predicted protein has two DWD motifs. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase;GTP binding protein beta 1 transcript=eq;prot=eq; - 4 No
BD1G12820 bdi histone acetyltransferase activity (Blast2GO) pid=Bradi1g12820.1;tid=Bradi1g12820.1;GeneName=Bradi1g12820;transcript=eq;prot=eq + Bd1 No
BD1G54510 bdi pid=Bradi1g54510.1;tid=Bradi1g54510.1;GeneName=Bradi1g54510;transcript=eq;prot=eq - Bd1 No
BD1G69000 bdi pid=Bradi1g69000.1;tid=Bradi1g69000.1;GeneName=Bradi1g69000;transcript=eq;prot=eq + Bd1 No
CP00062G01350 cpa name=evm.TU.supercontig_62.136;pid=evm.TU.supercontig_62.136;prot=eq;transcript=eq + supercontig_62 No
CP00062G01360 cpa name=evm.TU.supercontig_62.137;pid=evm.TU.supercontig_62.137;prot=eq;transcript=eq + supercontig_62 No
CP00062G01370 cpa name=evm.TU.supercontig_62.138;pid=evm.TU.supercontig_62.138;prot=eq;transcript=eq - supercontig_62 No
CR06G13100 cre name=estExt_GenewiseW_1.C_120008;pid=78205;prot=eq;tid=78205;transcript=eq - chromosome_6 No
FV0G34930 fve Coatomer subunit gamma (Gamma-COP) (similar to) transcript=eq;prot=eq;pid=gene11845 - scf0513146 No
FV5G07000 fve Guanine nucleotide-binding protein subunit beta-2 (similar to) transcript=eq;prot=eq;pid=gene20427 + LG5 No
FV5G07020 fve Coatomer subunit gamma (Gamma-COP) (putative) transcript=eq;prot=eq;pid=gene20429 - LG5 No
FV5G26970 fve Coatomer subunit gamma-1 (Gamma-1-COP) (similar to) transcript=eq;prot=eq;pid=gene29127 - LG5 No
GM04G01460 gma 04 pid=16254469;transcript=eq;prot=eq;name=Glyma04g01460.1 + Gm04 No
GM04G01470 gma 04 pid=16254470;transcript=eq;prot=eq;name=Glyma04g01470.1 - Gm04 No
GM06G01510 gma 06 pid=16261347;transcript=eq;prot=eq;name=Glyma06g01510.1 + Gm06 No
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