Gene family 
- Id
- HOM001584
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO002702 (31 genes in 23 species)
ORTHO008339 (21 genes in 19 species)
ORTHO058090 (2 genes in 2 species)
View all sub-families (3)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (3 genes)
- ath
- Arabidopsis thaliana (2 genes)
- bdi
- Brachypodium distachyon (2 genes)
- cpa
- Carica papaya (3 genes)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (2 genes)
- gma
- Glycine max (6 genes)
- lja
- Lotus japonicus (7 genes)
- mdo
- Malus domestica (6 genes)
- mes
- Manihot esculenta (3 genes)
- mrcc299
- Micromonas sp. RCC299 (2 genes)
- mtr
- Medicago truncatula (4 genes)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (3 genes)
- osaindica
- Oryza sativa ssp. indica (2 genes)
- ota
- Ostreococcus tauri (2 genes)
- ppa
- Physcomitrella patens (2 genes)
- ptr
- Populus trichocarpa (4 genes)
- rco
- Ricinus communis (2 genes)
- sbi
- Sorghum bicolor (3 genes)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (2 genes)
- vca
- Volvox carteri (4 genes)
- vvi
- Vitis vinifera (3 genes)
- zma
- Zea mays (4 genes)
The gene family HOM001584 has 74 genes in 25 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.
Toolbox
Explore
- ...the local gene organization for homologous genes.
- ...the phylogenetic trees of this gene family.
- ...the expansion/depletion of species in this gene family.
View
- ...the multiple sequence alignment of the homologous gene family.
- ...the similarity heatmap of this gene family.
- ...the genome wide organization of this gene family.
- ...the functional annotation associated with this gene family.
Index of genes with 1 constraints:
- gene family : HOM001584
Page 1 of 4, showing 20 records out of 74 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G01130 | aly | name=fgenesh2_kg.1__109__AT1G01220.1;pid=470155;prot=eq;tid=470155 | - | scaffold_1 | No | |
| AL1G50430 | aly | name=fgenesh1_pg.C_scaffold_1004221;pid=337656;prot=eq;tid=337656 | - | scaffold_1 | No | |
| AL3G13790 | aly | name=scaffold_301521.1;pid=897551;prot=eq;tid=929064 | + | scaffold_3 | No | |
| AT1G01220 | ath | Encodes a bifunctional enzyme that has both L-fucokinase and GDP-L-fucose pyrophosphorylase activities. It catalyzes the two steps of the L-fucose salvage pathway for the generation of activated GDP-L-fucose. This pathway seems to be of minor importance for cell wall polysaccharide biosynthesis compared to the de novo GDP-L-fucose biosynthesis pathway in Arabidopsis.;L-fucokinase/GDP-L-fucose pyrophosphorylase | transcript=eq;prot=eq; | + | 1 | No |
| AT3G13230 | ath | RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087); Has 734 Blast hits to 734 proteins in 323 species: Archae - 189; Bacteria - 0; Metazoa - 158; Fungi - 192; Plants - 83; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).;RNA-binding KH domain-containing protein | transcript=eq;prot=eq; | + | 3 | No |
| BD1G77547 | bdi | pid=Bradi1g77547.2;tid=Bradi1g77547.2;GeneName=Bradi1g77547;transcript=eq;prot=eq | + | Bd1 | No | |
| BD2G52180 | bdi | KH domain-containing protein similar to KH domain-containing protein, [Arabidopsis thaliana] AT3G13230 | pid=Bradi2g52180.1;tid=Bradi2g52180.1;GeneName=Bradi2g52180;transcript=eq;prot=eq | - | Bd2 | No |
| CP00019G01300 | cpa | name=evm.TU.supercontig_19.130;pid=evm.TU.supercontig_19.130;prot=eq;transcript=eq | - | supercontig_19 | No | |
| CP00106G00760 | cpa | name=evm.TU.supercontig_106.76;pid=evm.TU.supercontig_106.76;prot=eq;transcript=eq | - | supercontig_106 | No | |
| CP00139G00070 | cpa | name=evm.TU.supercontig_139.7;pid=evm.TU.supercontig_139.7;prot=eq;transcript=eq | - | supercontig_139 | No | |
| CR12G13800 | cre | name=Chlre2_kg.scaffold_20000177;pid=148035;prot=eq;tid=148035;transcript=eq | - | chromosome_12 | No | |
| FV5G23370 | fve | RNA-binding protein pno1 (similar to) | transcript=eq;prot=eq;pid=gene26812 | + | LG5 | No |
| FV7G05010 | fve | L-fucose kinase (Fucokinase) (probable) | transcript=eq;prot=eq;pid=gene18685 | + | LG7 | No |
| GM03G42000 | gma | 03 | pid=16254203;transcript=eq;prot=eq;name=Glyma03g42000.1 | - | Gm03 | No |
| GM08G44800 | gma | 08 | pid=16273854;transcript=eq;prot=eq;name=Glyma08g44800.1 | + | Gm08 | No |
| GM08G44870 | gma | 08 | pid=16273860;transcript=eq;prot=eq;name=Glyma08g44870.1 | - | Gm08 | No |
| GM18G08080 | gma | 18 | pid=16308260;transcript=eq;prot=eq;name=Glyma18g08080.1 | - | Gm18 | No |
| GM18G08100 | gma | 18 | pid=16308261;transcript=eq;prot=eq;name=Glyma18g08100.1 | - | Gm18 | No |
| GM19G44690 | gma | 19 | pid=16314949;transcript=eq;prot=eq;name=Glyma19g44690.1 | - | Gm19 | No |
| LJ0G010670 | lja | partial;prot=eq;transcript=eq;scaffold=LjSGA_008150;name=LjSGA_008150.1 | + | LjSGA_008150 | No |