Gene family  

Sub-families
ORTHO002702 (31 genes in 23 species)
ORTHO008339 (21 genes in 19 species)
ORTHO058090 (2 genes in 2 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (4 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (4 genes)



The gene family HOM001584 has 74 genes in 25 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 74 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G01130 aly name=fgenesh2_kg.1__109__AT1G01220.1;pid=470155;prot=eq;tid=470155 - scaffold_1 No
AL1G50430 aly name=fgenesh1_pg.C_scaffold_1004221;pid=337656;prot=eq;tid=337656 - scaffold_1 No
AL3G13790 aly name=scaffold_301521.1;pid=897551;prot=eq;tid=929064 + scaffold_3 No
AT1G01220 ath Encodes a bifunctional enzyme that has both L-fucokinase and GDP-L-fucose pyrophosphorylase activities. It catalyzes the two steps of the L-fucose salvage pathway for the generation of activated GDP-L-fucose. This pathway seems to be of minor importance for cell wall polysaccharide biosynthesis compared to the de novo GDP-L-fucose biosynthesis pathway in Arabidopsis.;L-fucokinase/GDP-L-fucose pyrophosphorylase transcript=eq;prot=eq; + 1 No
AT3G13230 ath RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087); Has 734 Blast hits to 734 proteins in 323 species: Archae - 189; Bacteria - 0; Metazoa - 158; Fungi - 192; Plants - 83; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).;RNA-binding KH domain-containing protein transcript=eq;prot=eq; + 3 No
BD1G77547 bdi pid=Bradi1g77547.2;tid=Bradi1g77547.2;GeneName=Bradi1g77547;transcript=eq;prot=eq + Bd1 No
BD2G52180 bdi KH domain-containing protein similar to KH domain-containing protein, [Arabidopsis thaliana] AT3G13230 pid=Bradi2g52180.1;tid=Bradi2g52180.1;GeneName=Bradi2g52180;transcript=eq;prot=eq - Bd2 No
CP00019G01300 cpa name=evm.TU.supercontig_19.130;pid=evm.TU.supercontig_19.130;prot=eq;transcript=eq - supercontig_19 No
CP00106G00760 cpa name=evm.TU.supercontig_106.76;pid=evm.TU.supercontig_106.76;prot=eq;transcript=eq - supercontig_106 No
CP00139G00070 cpa name=evm.TU.supercontig_139.7;pid=evm.TU.supercontig_139.7;prot=eq;transcript=eq - supercontig_139 No
CR12G13800 cre name=Chlre2_kg.scaffold_20000177;pid=148035;prot=eq;tid=148035;transcript=eq - chromosome_12 No
FV5G23370 fve RNA-binding protein pno1 (similar to) transcript=eq;prot=eq;pid=gene26812 + LG5 No
FV7G05010 fve L-fucose kinase (Fucokinase) (probable) transcript=eq;prot=eq;pid=gene18685 + LG7 No
GM03G42000 gma 03 pid=16254203;transcript=eq;prot=eq;name=Glyma03g42000.1 - Gm03 No
GM08G44800 gma 08 pid=16273854;transcript=eq;prot=eq;name=Glyma08g44800.1 + Gm08 No
GM08G44870 gma 08 pid=16273860;transcript=eq;prot=eq;name=Glyma08g44870.1 - Gm08 No
GM18G08080 gma 18 pid=16308260;transcript=eq;prot=eq;name=Glyma18g08080.1 - Gm18 No
GM18G08100 gma 18 pid=16308261;transcript=eq;prot=eq;name=Glyma18g08100.1 - Gm18 No
GM19G44690 gma 19 pid=16314949;transcript=eq;prot=eq;name=Glyma19g44690.1 - Gm19 No
LJ0G010670 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_008150;name=LjSGA_008150.1 + LjSGA_008150 No
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