Gene family  

Sub-families
ORTHO001165 (41 genes in 23 species)
ORTHO013136 (14 genes in 13 species)
ORTHO028466 (4 genes in 1 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (14 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family HOM001566 has 75 genes in 23 species (11 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 75 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G36450 aly name=fgenesh2_kg.3__3199__AT2G19730.2;pid=480498;prot=eq;tid=480498 - scaffold_3 No
AL7G12280 aly name=fgenesh2_kg.7__1249__AT4G29420.1;pid=491816;prot=eq;tid=491816 + scaffold_7 Yes
AL7G12290 aly name=fgenesh2_kg.7__1250__AT4G29410.1;pid=491817;prot=eq;tid=491817 + scaffold_7 No
AT2G19730 ath Ribosomal L28e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L28e (InterPro:IPR002672); BEST Arabidopsis thaliana protein match is: Ribosomal L28e protein family (TAIR:AT4G29410.2); Has 531 Blast hits to 531 proteins in 211 species: Archae - 0; Bacteria - 0; Metazoa - 280; Fungi - 94; Plants - 107; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).;Ribosomal L28e protein family transcript=eq;prot=eq; + 2 No
AT4G29410 ath Ribosomal L28e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L28e (InterPro:IPR002672); BEST Arabidopsis thaliana protein match is: Ribosomal L28e protein family (TAIR:AT2G19730.3); Has 531 Blast hits to 531 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 284; Fungi - 94; Plants - 107; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).;Ribosomal L28e protein family transcript=eq;prot=eq; - 4 No
AT4G29420 ath F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 59 Blast hits to 57 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;F-box/RNI-like superfamily protein transcript=eq;prot=eq; - 4 Yes
BD2G05800 bdi pid=Bradi2g05800.1;tid=Bradi2g05800.1;GeneName=Bradi2g05800;transcript=eq;prot=eq - Bd2 Yes
BD2G05808 bdi pid=Bradi2g05808.1;tid=Bradi2g05808.1;GeneName=Bradi2g05808;transcript=eq;prot=eq - Bd2 No
BD2G18150 bdi pid=Bradi2g18150.1;tid=Bradi2g18150.1;GeneName=Bradi2g18150;transcript=eq;prot=eq + Bd2 No
BD2G47760 bdi pid=Bradi2g47760.1;tid=Bradi2g47760.1;GeneName=Bradi2g47760;transcript=eq;prot=eq + Bd2 No
CP00032G00860 cpa name=evm.TU.supercontig_32.86;pid=evm.TU.supercontig_32.86;prot=eq;transcript=eq + supercontig_32 No
CP00131G00270 cpa name=evm.TU.supercontig_131.27;pid=evm.TU.supercontig_131.27;prot=eq;transcript=eq - supercontig_131 No
CR18G01330 cre name=Chlre2_kg.scaffold_66000003;pid=153674;prot=eq;tid=153674;transcript=eq + scaffold_18 No
FV0G36420 fve 60S ribosomal protein L28-1 (putative) transcript=eq;prot=eq;pid=gene11378 - scf0513146 No
FV4G21280 fve 60S ribosomal protein L28-1 (putative) transcript=eq;prot=eq;pid=gene23119 + LG4 No
GM05G36190 gma 05 pid=16260880;transcript=eq;prot=eq;name=Glyma05g36190.1 - Gm05 Yes
GM07G01540 gma 07 pid=16265792;transcript=eq;prot=eq;name=Glyma07g01540.1 + Gm07 No
GM08G03460 gma 08 pid=16269820;transcript=eq;prot=eq;name=Glyma08g03460.1 + Gm08 No
GM08G20960 gma 08 pid=16271915;transcript=eq;prot=eq;name=Glyma08g20960.1 + Gm08 No
GM08G36410 gma 08 pid=16272986;transcript=eq;prot=eq;name=Glyma08g36410.1 - Gm08 No
<< previous
1 | 2 | 3 | 4 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier