Gene family  

Sub-families
ORTHO000918 (44 genes in 22 species)
ORTHO013481 (13 genes in 10 species)
ORTHO016631 (8 genes in 7 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (10 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (4 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (4 genes)



The gene family HOM001562 has 76 genes in 22 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 76 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G07360 aly name=fgenesh2_kg.301__1__AT2G40080.1;pid=497391;prot=eq;tid=497391 + scaffold_301 No
AL1G18370 aly name=fgenesh2_kg.1__1906__AT1G17455.1;pid=471952;prot=eq;tid=471952 + scaffold_1 No
AL2G21420 aly name=fgenesh1_pg.C_scaffold_2001580;pid=339481;prot=eq;tid=339481 + scaffold_2 No
AL3G31720 aly name=scaffold_303390.1;pid=899420;prot=eq;tid=930933 + scaffold_3 No
AL4G26730 aly name=scaffold_402775.1;pid=903274;prot=eq;tid=934787 - scaffold_4 No
AT1G17455 ath ELF4-like 4 (ELF4-L4); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741); BEST Arabidopsis thaliana protein match is: ELF4-like 2 (TAIR:AT1G72630.1); Has 149 Blast hits to 148 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;ELF4-like 4 transcript=eq;prot=eq; + 1 No
AT1G72630 ath ELF4-like 2 (ELF4-L2); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741); BEST Arabidopsis thaliana protein match is: ELF4-like 4 (TAIR:AT1G17455.2); Has 149 Blast hits to 148 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;ELF4-like 2 transcript=eq;prot=eq; + 1 No
AT2G06255 ath ELF4-like 3 (ELF4-L3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741); BEST Arabidopsis thaliana protein match is: ELF4-like 4 (TAIR:AT1G17455.2); Has 149 Blast hits to 148 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;ELF4-like 3 transcript=eq;prot=eq; + 2 No
AT2G29950 ath ELF4-like 1 (ELF4-L1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1313) (TAIR:AT2G40080.1); Has 147 Blast hits to 146 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;ELF4-like 1 transcript=eq;prot=eq; + 2 No
AT2G40080 ath Encodes a novel nuclear 111 amino-acid phytochrome-regulated component of a negative feedback loop involving the circadian clock central oscillator components CCA1 and LHY. ELF4 is necessary for light-induced expression of both CCA1 and LHY, and conversely, CCA1 and LHY act negatively on light-induced ELF4 expression. ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. It is involved in the phyB-mediated constant red light induced seedling de-etiolation process and may function to coregulate the expression of a subset of phyB-regulated genes.;Protein of unknown function (DUF1313) transcript=eq;prot=eq; - 2 No
BD1G60090 bdi Homologous to Arabidopsis EARLY FLOWERING 4 - Like pid=Bradi1g60090.1;tid=Bradi1g60090.1;GeneName=Bradi1g60090;Name=BdELF4b;transcript=eq;prot=eq - Bd1 No
BD4G13227 bdi pid=Bradi4g13227.1;tid=Bradi4g13227.1;GeneName=Bradi4g13227;transcript=eq;prot=eq - Bd4 No
BD4G29580 bdi Homologous to Arabidopsis EARLY FLOWERING 4 - Like pid=Bradi4g29580.1;tid=Bradi4g29580.1;GeneName=Bradi4g29580;Name=BdELF4c;transcript=eq;prot=eq + Bd4 No
CP00025G01100 cpa name=evm.TU.supercontig_25.110;pid=evm.TU.supercontig_25.110;prot=eq;transcript=eq - supercontig_25 No
CP00415G00020 cpa name=evm.TU.supercontig_415.2;pid=evm.TU.supercontig_415.2;prot=eq;transcript=eq - supercontig_415 No
CP00554G00010 cpa name=evm.TU.supercontig_554.1;pid=evm.TU.supercontig_554.1;prot=eq;transcript=eq - supercontig_554 No
CR01G03380 cre name=pm.chromosome_1_#_166;pid=334254;prot=eq;tid=334261;transcript=eq + chromosome_1 No
FV0G15460 fve Signal recognition particle subunit SRP68 (probable) transcript=eq;prot=eq;pid=gene07412 - scf0513160 No
FV1G09930 fve hypothetical protein transcript=eq;prot=eq;pid=gene12733 - LG1 No
GM07G04180 gma 07 pid=16266134;transcript=eq;prot=eq;name=Glyma07g04180.1 - Gm07 No
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