Gene family  

Sub-families
ORTHO002064 (34 genes in 20 species)
ORTHO013141 (14 genes in 11 species)
ORTHO040501 (3 genes in 1 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (3 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (7 genes)
mtr
Medicago truncatula (5 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (6 genes)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (3 genes)



The gene family HOM001559 has 76 genes in 20 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 76 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G04790 aly name=fgenesh1_pm.C_scaffold_2000278;pid=315245;prot=eq;tid=315245 + scaffold_2 No
AL7G14560 aly name=fgenesh2_kg.7__1487__AT4G27430.1;pid=492054;prot=eq;tid=492054 - scaffold_7 No
AL8G06870 aly name=fgenesh2_kg.8__488__AT5G43310.1;pid=494672;prot=eq;tid=494672 + scaffold_8 No
AT1G61100 ath disease resistance protein (TIR class), putative; BEST Arabidopsis thaliana protein match is: COP1-interacting protein 7 (TAIR:AT4G27430.2); Has 1636 Blast hits to 1307 proteins in 221 species: Archae - 4; Bacteria - 130; Metazoa - 666; Fungi - 143; Plants - 195; Viruses - 9; Other Eukaryotes - 489 (source: NCBI BLink).;disease resistance protein (TIR class), putative transcript=eq;prot=eq; - 1 No
AT4G27430 ath Positive regulator of light-regulated genes. Novel nuclear protein which requires light for its high level expression.;COP1-interacting protein 7 transcript=eq;prot=eq; + 4 No
AT5G43310 ath COP1-interacting protein-related; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: COP1-interacting protein 7 (TAIR:AT4G27430.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;COP1-interacting protein-related transcript=eq;prot=eq; - 5 No
BD1G00560 bdi protein serine/threonine kinase activity (Blast2GO) pid=Bradi1g00560.1;tid=Bradi1g00560.1;GeneName=Bradi1g00560;transcript=eq;prot=eq - Bd1 No
BD1G28840 bdi pid=Bradi1g28840.1;tid=Bradi1g28840.1;GeneName=Bradi1g28840;transcript=eq;prot=eq + Bd1 No
CP00080G00270 cpa name=evm.TU.supercontig_80.27;pid=evm.TU.supercontig_80.27;prot=eq;transcript=eq + supercontig_80 No
CP00380G00060 cpa name=evm.TU.supercontig_380.6;pid=evm.TU.supercontig_380.6;prot=eq;transcript=eq - supercontig_380 No
CP00530G00050 cpa name=evm.TU.supercontig_530.5;pid=evm.TU.supercontig_530.5;prot=eq;transcript=eq - supercontig_530 No
FV2G45910 fve Protein SON (NRE-binding protein) (probable) transcript=eq;prot=eq;pid=gene31283 - LG2 No
FV4G00650 fve DNA topoisomerase 1 (probable) transcript=eq;prot=eq;pid=gene11490 + LG4 No
GM02G00690 gma 02 pid=16246521;transcript=eq;prot=eq;name=Glyma02g00690.1 - Gm02 No
GM10G00660 gma 10 pid=16278128;transcript=eq;prot=eq;name=Glyma10g00660.1 + Gm10 No
GM10G32560 gma 10 pid=16280707;transcript=eq;prot=eq;name=Glyma10g32560.1 + Gm10 No
GM12G35020 gma 12 pid=16288930;transcript=eq;prot=eq;name=Glyma12g35020.1 + Gm12 No
GM13G31620 gma 13 pid=16292267;transcript=eq;prot=eq;name=Glyma13g31620.1 - Gm13 No
GM13G35520 gma 13 pid=16292724;transcript=eq;prot=eq;name=Glyma13g35520.1 - Gm13 No
GM20G35020 gma 20 pid=16317903;transcript=eq;prot=eq;name=Glyma20g35020.1 - Gm20 No
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