Gene family  

Sub-families
ORTHO003181 (30 genes in 19 species)
ORTHO014698 (11 genes in 9 species)
ORTHO019891 (6 genes in 5 species)
View all sub-families (8)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (3 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (8 genes)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (5 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (4 genes)



The gene family HOM001548 has 76 genes in 20 species (7 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 76 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G25450 aly name=fgenesh2_kg.7__2557__AT4G17520.1;pid=493124;prot=eq;tid=493124 - scaffold_7 No
AL7G26160 aly name=fgenesh2_kg.7__2621__AT4G16830.3;pid=493188;prot=eq;tid=493188 - scaffold_7 No
AL8G00710 aly name=fgenesh2_kg.8__73__AT5G47210.1;pid=494257;prot=eq;tid=494257 + scaffold_8 No
AT4G16830 ath Hyaluronan / mRNA binding family; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 23191 Blast hits to 11934 proteins in 1060 species: Archae - 16; Bacteria - 7670; Metazoa - 7282; Fungi - 1721; Plants - 3144; Viruses - 315; Other Eukaryotes - 3043 (source: NCBI BLink).;Hyaluronan / mRNA binding family transcript=eq;prot=eq; + 4 No
AT4G17520 ath Hyaluronan / mRNA binding family; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT5G47210.1); Has 14577 Blast hits to 9436 proteins in 968 species: Archae - 15; Bacteria - 3155; Metazoa - 5443; Fungi - 1433; Plants - 1957; Viruses - 142; Other Eukaryotes - 2432 (source: NCBI BLink).;Hyaluronan / mRNA binding family transcript=eq;prot=eq; + 4 No
AT5G47210 ath Hyaluronan / mRNA binding family; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Hyaluronan / mRNA binding family transcript=eq;prot=eq; - 5 No
BD2G14540 bdi pid=Bradi2g14540.1;tid=Bradi2g14540.1;GeneName=Bradi2g14540;transcript=eq;prot=eq - Bd2 No
BD2G18860 bdi pid=Bradi2g18860.1;tid=Bradi2g18860.1;GeneName=Bradi2g18860;transcript=eq;prot=eq - Bd2 No
BD2G42850 bdi pid=Bradi2g42850.1;tid=Bradi2g42850.1;GeneName=Bradi2g42850;transcript=eq;prot=eq - Bd2 No
BD2G48500 bdi pid=Bradi2g48500.1;tid=Bradi2g48500.1;GeneName=Bradi2g48500;transcript=eq;prot=eq - Bd2 No
CP00022G00630 cpa name=evm.TU.supercontig_22.63;pid=evm.TU.supercontig_22.63;prot=eq;transcript=eq + supercontig_22 No
CP00672G00020 cpa name=evm.TU.supercontig_672.2;pid=evm.TU.supercontig_672.2;prot=eq;transcript=eq - supercontig_672 No
CP46241G00010 cpa name=evm.TU.contig_46241.1;pid=evm.TU.contig_46241.1;prot=eq;transcript=eq + contig_46241 No
FV5G32030 fve Histidine-rich glycoprotein, Precursor (probable) transcript=eq;prot=eq;pid=gene10820 - LG5 No
FV7G12860 fve Histidine-rich glycoprotein, Precursor (probable) transcript=eq;prot=eq;pid=gene04882 - LG7 No
GM02G12800 gma 02 pid=16247887;transcript=eq;prot=eq;name=Glyma02g12800.1 + Gm02 No
GM03G10930 gma 03 pid=16251580;transcript=eq;prot=eq;name=Glyma03g10930.1 - Gm03 No
GM03G26100 gma 03 pid=16252367;transcript=eq;prot=eq;name=Glyma03g26100.1 - Gm03 No
GM07G13900 gma 07 pid=16267213;transcript=eq;prot=eq;name=Glyma07g13900.1 - Gm07 No
GM09G37850 gma 09 pid=16277566;transcript=eq;prot=eq;name=Glyma09g37850.1 + Gm09 No
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