Gene family 
- Id
- HOM001548
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO003181 (30 genes in 19 species)
ORTHO014698 (11 genes in 9 species)
ORTHO019891 (6 genes in 5 species)
View all sub-families (8)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (3 genes)
- ath
- Arabidopsis thaliana (3 genes)
- bdi
- Brachypodium distachyon (4 genes)
- cpa
- Carica papaya (3 genes)
- fve
- Fragaria vesca (2 genes)
- gma
- Glycine max (7 genes)
- lja
- Lotus japonicus (8 genes)
- mdo
- Malus domestica (6 genes)
- mes
- Manihot esculenta (5 genes)
- mtr
- Medicago truncatula (1 gene)
- osa
- Oryza sativa ssp. japonica (4 genes)
- osaindica
- Oryza sativa ssp. indica (5 genes)
- ppa
- Physcomitrella patens (5 genes)
- ptr
- Populus trichocarpa (4 genes)
- rco
- Ricinus communis (3 genes)
- sbi
- Sorghum bicolor (4 genes)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (2 genes)
- vvi
- Vitis vinifera (2 genes)
- zma
- Zea mays (4 genes)
The gene family HOM001548 has 76 genes in 20 species (7 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM001548
Page 1 of 4, showing 20 records out of 76 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL7G25450 | aly | name=fgenesh2_kg.7__2557__AT4G17520.1;pid=493124;prot=eq;tid=493124 | - | scaffold_7 | No | |
| AL7G26160 | aly | name=fgenesh2_kg.7__2621__AT4G16830.3;pid=493188;prot=eq;tid=493188 | - | scaffold_7 | No | |
| AL8G00710 | aly | name=fgenesh2_kg.8__73__AT5G47210.1;pid=494257;prot=eq;tid=494257 | + | scaffold_8 | No | |
| AT4G16830 | ath | Hyaluronan / mRNA binding family; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 23191 Blast hits to 11934 proteins in 1060 species: Archae - 16; Bacteria - 7670; Metazoa - 7282; Fungi - 1721; Plants - 3144; Viruses - 315; Other Eukaryotes - 3043 (source: NCBI BLink).;Hyaluronan / mRNA binding family | transcript=eq;prot=eq; | + | 4 | No |
| AT4G17520 | ath | Hyaluronan / mRNA binding family; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT5G47210.1); Has 14577 Blast hits to 9436 proteins in 968 species: Archae - 15; Bacteria - 3155; Metazoa - 5443; Fungi - 1433; Plants - 1957; Viruses - 142; Other Eukaryotes - 2432 (source: NCBI BLink).;Hyaluronan / mRNA binding family | transcript=eq;prot=eq; | + | 4 | No |
| AT5G47210 | ath | Hyaluronan / mRNA binding family; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Hyaluronan / mRNA binding family | transcript=eq;prot=eq; | - | 5 | No |
| BD2G14540 | bdi | pid=Bradi2g14540.1;tid=Bradi2g14540.1;GeneName=Bradi2g14540;transcript=eq;prot=eq | - | Bd2 | No | |
| BD2G18860 | bdi | pid=Bradi2g18860.1;tid=Bradi2g18860.1;GeneName=Bradi2g18860;transcript=eq;prot=eq | - | Bd2 | No | |
| BD2G42850 | bdi | pid=Bradi2g42850.1;tid=Bradi2g42850.1;GeneName=Bradi2g42850;transcript=eq;prot=eq | - | Bd2 | No | |
| BD2G48500 | bdi | pid=Bradi2g48500.1;tid=Bradi2g48500.1;GeneName=Bradi2g48500;transcript=eq;prot=eq | - | Bd2 | No | |
| CP00022G00630 | cpa | name=evm.TU.supercontig_22.63;pid=evm.TU.supercontig_22.63;prot=eq;transcript=eq | + | supercontig_22 | No | |
| CP00672G00020 | cpa | name=evm.TU.supercontig_672.2;pid=evm.TU.supercontig_672.2;prot=eq;transcript=eq | - | supercontig_672 | No | |
| CP46241G00010 | cpa | name=evm.TU.contig_46241.1;pid=evm.TU.contig_46241.1;prot=eq;transcript=eq | + | contig_46241 | No | |
| FV5G32030 | fve | Histidine-rich glycoprotein, Precursor (probable) | transcript=eq;prot=eq;pid=gene10820 | - | LG5 | No |
| FV7G12860 | fve | Histidine-rich glycoprotein, Precursor (probable) | transcript=eq;prot=eq;pid=gene04882 | - | LG7 | No |
| GM02G12800 | gma | 02 | pid=16247887;transcript=eq;prot=eq;name=Glyma02g12800.1 | + | Gm02 | No |
| GM03G10930 | gma | 03 | pid=16251580;transcript=eq;prot=eq;name=Glyma03g10930.1 | - | Gm03 | No |
| GM03G26100 | gma | 03 | pid=16252367;transcript=eq;prot=eq;name=Glyma03g26100.1 | - | Gm03 | No |
| GM07G13900 | gma | 07 | pid=16267213;transcript=eq;prot=eq;name=Glyma07g13900.1 | - | Gm07 | No |
| GM09G37850 | gma | 09 | pid=16277566;transcript=eq;prot=eq;name=Glyma09g37850.1 | + | Gm09 | No |