Gene family  

Sub-families
ORTHO003260 (29 genes in 22 species)
ORTHO005708 (25 genes in 16 species)
ORTHO015556 (10 genes in 8 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (4 genes)



The gene family HOM001545 has 76 genes in 25 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 76 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G10160 aly name=Al_scaffold_0706_1;pid=855844;prot=eq;tid=887357 - scaffold_706 No
AL3G28650 aly name=fgenesh2_kg.3__2715__AT3G25070.1;pid=480014;prot=eq;tid=480014 + scaffold_3 No
AL3G28660 aly name=fgenesh2_kg.3__2716__AT3G25100.1;pid=480015;prot=eq;tid=480015 + scaffold_3 No
AT3G25070 ath Encodes a member of the R protein complex and may represent a virulence target of type III pili effector proteins (virulence factors) from bacterial pathogens, which is 'guarded' by R protein complex (RPM1 and RPS2 proteins). RIN4 physically interacts with RPS2 and RPM1 in vivo. Bacterial avirulence (Avr) effectors AvrB, AvrRpm1, and AvrRpt2 induce a mobility shift in RIN4 and expression of AvrRpt2 induces rapid degradation of RIN4. RIN4 contains 2 sites for AvrRpt2 autocleavage, called RCS1 and RCS2. Overexpression of RIN4 inhibits multiple phenotypes associated with AvrRpt2 function and also inhibits PAMP-induced defense signaling. Attached to the plasma membrane at its carboxyl terminus. Cleaved by AvrRpt2 at two PxFGxW motifs, one releasing a large portion of RIN4 from the plasma membrane and both exposing amino-terminal residues that destabilized the carboxyl-terminal cleavage products by targeting them for N-end ubiquitylation and proteasomal degradation. Major virulence target of the TTSE HopF2Pto.;RPM1 interacting protein 4 transcript=eq;prot=eq; + 3 No
AT3G25100 ath Required for normal meiosis, may act in the last round of DNA replication prior to meiosis, sequence similar to yeast CDC45;cell division cycle 45 transcript=eq;prot=eq; + 3 No
BD1G01730 bdi pid=Bradi1g01730.3;tid=Bradi1g01730.3;GeneName=Bradi1g01730;transcript=eq;prot=eq + Bd1 No
BD3G40950 bdi pid=Bradi3g40950.1;tid=Bradi3g40950.1;GeneName=Bradi3g40950;transcript=eq;prot=eq - Bd3 No
BD4G43950 bdi pid=Bradi4g43950.1;tid=Bradi4g43950.1;GeneName=Bradi4g43950;transcript=eq;prot=eq - Bd4 No
CP00043G01050 cpa name=evm.TU.supercontig_43.105;pid=evm.TU.supercontig_43.105;prot=eq;transcript=eq + supercontig_43 No
CP00083G00270 cpa name=evm.TU.supercontig_83.27;pid=evm.TU.supercontig_83.27;prot=eq;transcript=eq + supercontig_83 No
CP44943G00010 cpa name=evm.TU.contig_44943.1;pid=evm.TU.contig_44943.1;prot=eq;transcript=eq - contig_44943 No
CR06G04520 cre name=Chlre2_kg.scaffold_3000098;pid=142125;prot=eq;tid=142125;transcript=eq + chromosome_6 No
FV2G14480 fve Cell division control protein 45 homolog (probable) transcript=eq;prot=eq;pid=gene17583 - LG2 No
FV3G01970 fve RPM1-interacting protein 4 (probable) transcript=eq;prot=eq;pid=gene19744 + LG3 No
GM03G19920 gma 03 pid=16251951;transcript=eq;prot=eq;name=Glyma03g19920.1 + Gm03 No
GM08G46380 gma 08 pid=16274029;transcript=eq;prot=eq;name=Glyma08g46380.1 + Gm08 No
GM08G46400 gma 08 pid=16274031;transcript=eq;prot=eq;name=Glyma08g46400.1 - Gm08 No
GM09G01150 gma 09 pid=16274375;transcript=eq;prot=eq;name=Glyma09g01150.1 + Gm09 Yes
GM16G12160 gma 16 pid=16302143;transcript=eq;prot=eq;name=Glyma16g12160.1 - Gm16 No
GM18G36000 gma 18 pid=16309739;transcript=eq;prot=eq;name=Glyma18g36000.1 + Gm18 No
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