Gene family  

Sub-families
ORTHO003278 (29 genes in 22 species)
ORTHO007102 (23 genes in 22 species)
ORTHO037258 (3 genes in 3 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (8 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (4 genes)



The gene family HOM001544 has 76 genes in 25 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 76 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G05640 aly name=fgenesh1_pm.C_scaffold_1000471;pid=311691;prot=eq;tid=311691 - scaffold_1 No
AL3G11240 aly name=scaffold_301249.1;pid=897279;prot=eq;tid=928792 - scaffold_3 No
AL4G16250 aly name=fgenesh1_pm.C_scaffold_4000942;pid=320885;prot=eq;tid=320885 + scaffold_4 No
AL4G30910 aly name=fgenesh2_kg.4__2513__AT2G43430.1;pid=483453;prot=eq;tid=483453 - scaffold_4 No
AT1G06130 ath glyoxalase 2-4 (GLX2-4); FUNCTIONS IN: hydrolase activity, zinc ion binding, hydroxyacylglutathione hydrolase activity; INVOLVED IN: methylglyoxal catabolic process to D-lactate; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279), Hydroxyacylglutathione hydrolase (InterPro:IPR017782); BEST Arabidopsis thaliana protein match is: glyoxalase 2-5 (TAIR:AT2G31350.1); Has 15456 Blast hits to 15455 proteins in 2500 species: Archae - 395; Bacteria - 9969; Metazoa - 478; Fungi - 329; Plants - 213; Viruses - 0; Other Eukaryotes - 4072 (source: NCBI BLink).;glyoxalase 2-4 transcript=eq;prot=eq; - 1 No
AT2G31350 ath Encodes a mitochondrial glyoxalase 2 that can accommodate a number of different metal centers and with the predominant metal center being Fe(III)Zn(II).;glyoxalase 2-5 transcript=eq;prot=eq; + 2 No
AT2G43430 ath Encodes a predicted mitochondrial glyoxalase GLX2-1. Studies using recombinant protein show that GLX2-1 contains a dinuclear metal binding site, but does not have glyoxalase 2 activity.;glyoxalase 2-1 transcript=eq;prot=eq; - 2 No
AT3G10850 ath glyoxalase II cytoplasmic isozyme (Glx2-2) mRNA, complete;Metallo-hydrolase/oxidoreductase superfamily protein transcript=eq;prot=eq; - 3 No
BD1G63410 bdi hydroxyacylglutathione hydrolase activity, zinc ion binding (Blast2GO) pid=Bradi1g63410.1;tid=Bradi1g63410.1;GeneName=Bradi1g63410;transcript=eq;prot=eq + Bd1 No
BD4G35270 bdi hydroxyacylglutathione hydrolase activity, zinc ion binding (Blast2GO) pid=Bradi4g35270.1;tid=Bradi4g35270.1;GeneName=Bradi4g35270;transcript=eq;prot=eq - Bd4 No
CP00009G03080 cpa name=evm.TU.supercontig_9.308;pid=evm.TU.supercontig_9.308;prot=eq;transcript=eq - supercontig_9 No
CP00019G00360 cpa name=evm.TU.supercontig_19.36;pid=evm.TU.supercontig_19.36;prot=eq;transcript=eq - supercontig_19 No
CR06G05790 cre name=Chlre2_kg.scaffold_100000004;pid=154922;prot=eq;tid=154922;transcript=eq - chromosome_6 No
CR12G15410 cre name=estExt_fgenesh1_pm.C_chromosome_120849;pid=380549;prot=eq;tid=380556;transcript=eq - chromosome_12 No
FV3G34740 fve Hydroxyacylglutathione hydrolase 2, mitochondrial (Glx II), Precursor (similar to) transcript=eq;prot=eq;pid=gene01449 + LG3 No
FV7G31530 fve Hydroxyacylglutathione hydrolase cytoplasmic (Glx II) (putative) transcript=eq;prot=eq;pid=gene21388 + LG7 No
GM02G38460 gma 02 pid=16249467;transcript=eq;prot=eq;name=Glyma02g38460.1 + Gm02 No
GM04G40210 gma 04 pid=16257370;transcript=eq;prot=eq;name=Glyma04g40210.1 + Gm04 No
GM06G14600 gma 06 pid=16262951;transcript=eq;prot=eq;name=Glyma06g14600.1 - Gm06 No
GM11G13470 gma 11 pid=16283755;transcript=eq;prot=eq;name=Glyma11g13470.1 + Gm11 No
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