Gene family  

Sub-families
ORTHO003570 (29 genes in 21 species)
ORTHO004618 (27 genes in 24 species)
ORTHO016279 (9 genes in 7 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (8 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (4 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (4 genes)



The gene family HOM001543 has 76 genes in 24 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 76 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G36700 aly name=fgenesh2_kg.6__3253__AT4G04860.1;pid=490119;prot=eq;tid=490119 + scaffold_6 No
AL7G12400 aly name=fgenesh2_kg.7__1256__AT4G29330.1;pid=491823;prot=eq;tid=491823 - scaffold_7 No
AL7G20770 aly name=fgenesh2_kg.7__2126__AT4G21810.1;pid=492693;prot=eq;tid=492693 + scaffold_7 No
AT4G04860 ath DERLIN-2.2 (DER2.2); CONTAINS InterPro DOMAIN/s: Der1-like (InterPro:IPR007599); BEST Arabidopsis thaliana protein match is: DERLIN-2.1 (TAIR:AT4G21810.1); Has 863 Blast hits to 862 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 343; Fungi - 190; Plants - 145; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).;DERLIN-2.2 transcript=eq;prot=eq; + 4 No
AT4G21810 ath DERLIN-2.1 (DER2.1); CONTAINS InterPro DOMAIN/s: Der1-like (InterPro:IPR007599); BEST Arabidopsis thaliana protein match is: DERLIN-2.2 (TAIR:AT4G04860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;DERLIN-2.1 transcript=eq;prot=eq; - 4 No
AT4G29330 ath DERLIN-1 (DER1); CONTAINS InterPro DOMAIN/s: Der1-like (InterPro:IPR007599); BEST Arabidopsis thaliana protein match is: DERLIN-2.2 (TAIR:AT4G04860.1); Has 918 Blast hits to 916 proteins in 241 species: Archae - 0; Bacteria - 22; Metazoa - 340; Fungi - 200; Plants - 147; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).;DERLIN-1 transcript=eq;prot=eq; + 4 No
BD1G01290 bdi MHC class I protein binding (Blast2GO) pid=Bradi1g01290.1;tid=Bradi1g01290.1;GeneName=Bradi1g01290;transcript=eq;prot=eq - Bd1 No
BD2G33360 bdi MHC class I protein binding (Blast2GO) pid=Bradi2g33360.1;tid=Bradi2g33360.1;GeneName=Bradi2g33360;transcript=eq;prot=eq + Bd2 No
CP00078G00330 cpa name=evm.TU.supercontig_78.33;pid=evm.TU.supercontig_78.33;prot=eq;transcript=eq - supercontig_78 No
CP00198G00390 cpa name=evm.TU.supercontig_198.39;pid=evm.TU.supercontig_198.39;prot=eq;transcript=eq - supercontig_198 No
CR12G08360 cre name=estExt_fgenesh2_kg.C_310044;pid=184920;prot=eq;tid=184920;transcript=eq - chromosome_12 No
CR15G00420 cre name=au.g5788_t1;pid=287561;prot=eq;tid=287568;transcript=eq - chromosome_15 No
FV0G36010 fve Derlin-1 (putative) transcript=eq;prot=eq;pid=gene11337 - scf0513146 No
FV3G00710 fve Derlin-2.2 (putative) transcript=eq;prot=eq;pid=gene19590 - LG3 No
GM04G14250 gma 04 pid=16255857;transcript=eq;prot=eq;name=Glyma04g14250.1 + Gm04 No
GM05G35990 gma 05 pid=16260855;transcript=eq;prot=eq;name=Glyma05g35990.1 - Gm05 No
GM06G47560 gma 06 pid=16265496;transcript=eq;prot=eq;name=Glyma06g47560.1 - Gm06 No
GM08G03630 gma 08 pid=16269839;transcript=eq;prot=eq;name=Glyma08g03630.1 + Gm08 No
GM13G27600 gma 13 pid=16291775;transcript=eq;prot=eq;name=Glyma13g27600.1 + Gm13 No
GM15G11350 gma 15 pid=16298422;transcript=eq;prot=eq;name=Glyma15g11350.1 - Gm15 No
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