Gene family 
- Id
- HOM001539
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO001485 (38 genes in 24 species)
ORTHO004538 (27 genes in 24 species)
View all sub-families (2)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (3 genes)
- ath
- Arabidopsis thaliana (3 genes)
- bdi
- Brachypodium distachyon (2 genes)
- cpa
- Carica papaya (4 genes)
- cre
- Chlamydomonas reinhardtii (2 genes)
- fve
- Fragaria vesca (2 genes)
- gma
- Glycine max (6 genes)
- lja
- Lotus japonicus (3 genes)
- mdo
- Malus domestica (7 genes)
- mes
- Manihot esculenta (3 genes)
- mrcc299
- Micromonas sp. RCC299 (2 genes)
- mtr
- Medicago truncatula (5 genes)
- olu
- Ostreococcus lucimarinus (3 genes)
- osa
- Oryza sativa ssp. japonica (2 genes)
- osaindica
- Oryza sativa ssp. indica (2 genes)
- ota
- Ostreococcus tauri (3 genes)
- ppa
- Physcomitrella patens (4 genes)
- ptr
- Populus trichocarpa (3 genes)
- rco
- Ricinus communis (2 genes)
- sbi
- Sorghum bicolor (3 genes)
- tca
- Theobroma cacao (3 genes)
- vca
- Volvox carteri (2 genes)
- vvi
- Vitis vinifera (3 genes)
- zma
- Zea mays (4 genes)
The gene family HOM001539 has 76 genes in 24 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM001539
Page 1 of 4, showing 20 records out of 76 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL6G11290 | aly | name=fgenesh2_kg.6__1119__AT5G11490.1;pid=487985;prot=eq;tid=487985 | + | scaffold_6 | No | |
| AL6G34110 | aly | name=fgenesh2_kg.6__3103__AT4G11380.1;pid=489969;prot=eq;tid=489969 | + | scaffold_6 | No | |
| AL7G18730 | aly | name=fgenesh2_kg.7__1960__AT4G23460.1;pid=492527;prot=eq;tid=492527 | + | scaffold_7 | No | |
| AT4G11380 | ath | Adaptin family protein; FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain (InterPro:IPR013037), Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G23460.1).;Adaptin family protein | transcript=eq;prot=eq; | + | 4 | No |
| AT4G23460 | ath | Adaptin family protein; FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain (InterPro:IPR013037), Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G11380.1); Has 3513 Blast hits to 3431 proteins in 288 species: Archae - 10; Bacteria - 22; Metazoa - 1477; Fungi - 873; Plants - 441; Viruses - 0; Other Eukaryotes - 690 (source: NCBI BLink).;Adaptin family protein | transcript=eq;prot=eq; | - | 4 | No |
| AT5G11490 | ath | adaptin family protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G23460.1).;adaptin family protein | transcript=eq;prot=eq; | + | 5 | No |
| BD1G62210 | bdi | protein phosphatase binding (Blast2GO) | pid=Bradi1g62210.1;tid=Bradi1g62210.1;GeneName=Bradi1g62210;transcript=eq;prot=eq | - | Bd1 | No |
| BD2G44070 | bdi | pid=Bradi2g44070.1;tid=Bradi2g44070.1;GeneName=Bradi2g44070;transcript=eq;prot=eq | + | Bd2 | No | |
| CP00078G00750 | cpa | name=evm.TU.supercontig_78.75;pid=evm.TU.supercontig_78.75;prot=eq;transcript=eq | - | supercontig_78 | No | |
| CP00180G00070 | cpa | name=evm.TU.supercontig_180.7;pid=evm.TU.supercontig_180.7;prot=eq;transcript=eq | - | supercontig_180 | No | |
| CP00180G00080 | cpa | name=evm.TU.supercontig_180.8;pid=evm.TU.supercontig_180.8;prot=eq;transcript=eq | - | supercontig_180 | No | |
| CP00180G00090 | cpa | name=evm.TU.supercontig_180.9;pid=evm.TU.supercontig_180.9;prot=eq;transcript=eq | - | supercontig_180 | No | |
| CR11G02340 | cre | name=pasa_Sanger_mRNA6259;pid=393988;prot=eq;tid=396503;transcript=eq | - | chromosome_11 | No | |
| CR24G00040 | cre | name=SAN_fgenesh2_pg.C_scaffold_58000006;pid=195449;prot=eq;tid=195449;transcript=eq | - | scaffold_24 | No | |
| FV2G35790 | fve | AP-4 complex subunit beta (probable) | transcript=eq;prot=eq;pid=gene08785 | - | LG2 | No |
| FV5G03220 | fve | AP-1 complex subunit beta-1 (putative) | transcript=eq;prot=eq;pid=gene31803 | - | LG5 | No |
| GM01G43680 | gma | 01 | pid=16246205;transcript=eq;prot=eq;name=Glyma01g43680.1 | + | Gm01 | No |
| GM04G08480 | gma | 04 | pid=16255309;transcript=eq;prot=eq;name=Glyma04g08480.1 | + | Gm04 | No |
| GM06G08590 | gma | 06 | pid=16262196;transcript=eq;prot=eq;name=Glyma06g08590.1 | + | Gm06 | No |
| GM11G01800 | gma | 11 | pid=16282344;transcript=eq;prot=eq;name=Glyma11g01800.1 | - | Gm11 | No |