Gene family  

Sub-families
ORTHO001485 (38 genes in 24 species)
ORTHO004538 (27 genes in 24 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (5 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (3 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (4 genes)



The gene family HOM001539 has 76 genes in 24 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 76 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G11290 aly name=fgenesh2_kg.6__1119__AT5G11490.1;pid=487985;prot=eq;tid=487985 + scaffold_6 No
AL6G34110 aly name=fgenesh2_kg.6__3103__AT4G11380.1;pid=489969;prot=eq;tid=489969 + scaffold_6 No
AL7G18730 aly name=fgenesh2_kg.7__1960__AT4G23460.1;pid=492527;prot=eq;tid=492527 + scaffold_7 No
AT4G11380 ath Adaptin family protein; FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain (InterPro:IPR013037), Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G23460.1).;Adaptin family protein transcript=eq;prot=eq; + 4 No
AT4G23460 ath Adaptin family protein; FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain (InterPro:IPR013037), Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G11380.1); Has 3513 Blast hits to 3431 proteins in 288 species: Archae - 10; Bacteria - 22; Metazoa - 1477; Fungi - 873; Plants - 441; Viruses - 0; Other Eukaryotes - 690 (source: NCBI BLink).;Adaptin family protein transcript=eq;prot=eq; - 4 No
AT5G11490 ath adaptin family protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G23460.1).;adaptin family protein transcript=eq;prot=eq; + 5 No
BD1G62210 bdi protein phosphatase binding (Blast2GO) pid=Bradi1g62210.1;tid=Bradi1g62210.1;GeneName=Bradi1g62210;transcript=eq;prot=eq - Bd1 No
BD2G44070 bdi pid=Bradi2g44070.1;tid=Bradi2g44070.1;GeneName=Bradi2g44070;transcript=eq;prot=eq + Bd2 No
CP00078G00750 cpa name=evm.TU.supercontig_78.75;pid=evm.TU.supercontig_78.75;prot=eq;transcript=eq - supercontig_78 No
CP00180G00070 cpa name=evm.TU.supercontig_180.7;pid=evm.TU.supercontig_180.7;prot=eq;transcript=eq - supercontig_180 No
CP00180G00080 cpa name=evm.TU.supercontig_180.8;pid=evm.TU.supercontig_180.8;prot=eq;transcript=eq - supercontig_180 No
CP00180G00090 cpa name=evm.TU.supercontig_180.9;pid=evm.TU.supercontig_180.9;prot=eq;transcript=eq - supercontig_180 No
CR11G02340 cre name=pasa_Sanger_mRNA6259;pid=393988;prot=eq;tid=396503;transcript=eq - chromosome_11 No
CR24G00040 cre name=SAN_fgenesh2_pg.C_scaffold_58000006;pid=195449;prot=eq;tid=195449;transcript=eq - scaffold_24 No
FV2G35790 fve AP-4 complex subunit beta (probable) transcript=eq;prot=eq;pid=gene08785 - LG2 No
FV5G03220 fve AP-1 complex subunit beta-1 (putative) transcript=eq;prot=eq;pid=gene31803 - LG5 No
GM01G43680 gma 01 pid=16246205;transcript=eq;prot=eq;name=Glyma01g43680.1 + Gm01 No
GM04G08480 gma 04 pid=16255309;transcript=eq;prot=eq;name=Glyma04g08480.1 + Gm04 No
GM06G08590 gma 06 pid=16262196;transcript=eq;prot=eq;name=Glyma06g08590.1 + Gm06 No
GM11G01800 gma 11 pid=16282344;transcript=eq;prot=eq;name=Glyma11g01800.1 - Gm11 No
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