Gene family  

Sub-families
ORTHO002215 (33 genes in 23 species)
ORTHO003732 (28 genes in 24 species)
ORTHO076456 (2 genes in 1 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (3 genes)



The gene family HOM001520 has 77 genes in 25 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 77 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G20420 aly name=Al_scaffold_0001_2017;pid=880250;prot=eq;tid=911763 + scaffold_1 No
AL2G07810 aly name=scaffold_200791.1;pid=893717;prot=eq;tid=925230 - scaffold_2 No
AL3G23010 aly name=fgenesh1_pg.C_scaffold_3002012;pid=342249;prot=eq;tid=342249 - scaffold_3 No
AL3G23020 aly name=scaffold_302503.1;pid=898533;prot=eq;tid=930046 - scaffold_3 Yes
AL5G00730 aly name=fgenesh2_kg.5__77__AT2G01690.2;pid=484085;prot=eq;tid=484085 - scaffold_5 No
AT1G14850 ath Encodes a protein similar to nucleoporin, a a major component of the nuclear pore complex (NPC) involved in cellular nucleo-cytoplasmic transport;nucleoporin 155 transcript=eq;prot=eq; - 1 No
AT2G01690 ath ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Protein of unknown function DUF3434 (InterPro:IPR021841), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;ARM repeat superfamily protein transcript=eq;prot=eq; - 2 No
BD1G69510 bdi pid=Bradi1g69510.1;tid=Bradi1g69510.1;GeneName=Bradi1g69510;transcript=eq;prot=eq - Bd1 No
BD1G69520 bdi protein serine/threonine phosphatase activity (Blast2GO) pid=Bradi1g69520.1;tid=Bradi1g69520.1;GeneName=Bradi1g69520;transcript=eq;prot=eq + Bd1 No
CP00002G01840 cpa name=evm.TU.supercontig_2.184;pid=evm.TU.supercontig_2.184;prot=eq;transcript=eq - supercontig_2 No
CP00002G01850 cpa name=evm.TU.supercontig_2.185;pid=evm.TU.supercontig_2.185;prot=eq;transcript=eq + supercontig_2 No
CR01G12950 cre name=Chlre2_kg.scaffold_45000127;pid=152465;prot=eq;tid=152465;transcript=eq - chromosome_1 No
CR09G01770 cre name=estExt_fgenesh2_pg.C_220139;pid=191024;prot=eq;tid=191024;transcript=eq + chromosome_9 No
FV0G07840 fve Nuclear pore complex protein Nup155 (probable) transcript=eq;prot=eq;pid=gene06257 + scf0513158 No
FV0G07850 fve Protein VAC14 homolog (probable) transcript=eq;prot=eq;pid=gene06258 + scf0513158 No
FV0G19820 fve Probable nucleoporin C890.06 transcript=eq;prot=eq;pid=gene05805 + scf0513160 No
GM02G09340 gma 02 pid=16247503;transcript=eq;prot=eq;name=Glyma02g09340.1 - Gm02 No
GM05G34600 gma 05 pid=16260688;transcript=eq;prot=eq;name=Glyma05g34600.1 + Gm05 No
GM05G34610 gma 05 pid=16260689;transcript=eq;prot=eq;name=Glyma05g34610.1 + Gm05 No
GM07G26030 gma 07 pid=16267998;transcript=eq;prot=eq;name=Glyma07g26030.1 - Gm07 No
<< previous
1 | 2 | 3 | 4 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier