Gene family 
- Id
- HOM001520
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO002215 (33 genes in 23 species)
ORTHO003732 (28 genes in 24 species)
ORTHO076456 (2 genes in 1 species)
View all sub-families (3)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (5 genes)
- ath
- Arabidopsis thaliana (2 genes)
- bdi
- Brachypodium distachyon (2 genes)
- cpa
- Carica papaya (2 genes)
- cre
- Chlamydomonas reinhardtii (2 genes)
- fve
- Fragaria vesca (3 genes)
- gma
- Glycine max (6 genes)
- lja
- Lotus japonicus (5 genes)
- mdo
- Malus domestica (5 genes)
- mes
- Manihot esculenta (3 genes)
- mrcc299
- Micromonas sp. RCC299 (2 genes)
- mtr
- Medicago truncatula (2 genes)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (3 genes)
- osaindica
- Oryza sativa ssp. indica (2 genes)
- ota
- Ostreococcus tauri (2 genes)
- ppa
- Physcomitrella patens (5 genes)
- ptr
- Populus trichocarpa (4 genes)
- rco
- Ricinus communis (2 genes)
- sbi
- Sorghum bicolor (3 genes)
- smo
- Selaginella moellendorffii (2 genes)
- tca
- Theobroma cacao (2 genes)
- vca
- Volvox carteri (2 genes)
- vvi
- Vitis vinifera (7 genes)
- zma
- Zea mays (3 genes)
The gene family HOM001520 has 77 genes in 25 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM001520
Page 1 of 4, showing 20 records out of 77 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G20420 | aly | name=Al_scaffold_0001_2017;pid=880250;prot=eq;tid=911763 | + | scaffold_1 | No | |
| AL2G07810 | aly | name=scaffold_200791.1;pid=893717;prot=eq;tid=925230 | - | scaffold_2 | No | |
| AL3G23010 | aly | name=fgenesh1_pg.C_scaffold_3002012;pid=342249;prot=eq;tid=342249 | - | scaffold_3 | No | |
| AL3G23020 | aly | name=scaffold_302503.1;pid=898533;prot=eq;tid=930046 | - | scaffold_3 | Yes | |
| AL5G00730 | aly | name=fgenesh2_kg.5__77__AT2G01690.2;pid=484085;prot=eq;tid=484085 | - | scaffold_5 | No | |
| AT1G14850 | ath | Encodes a protein similar to nucleoporin, a a major component of the nuclear pore complex (NPC) involved in cellular nucleo-cytoplasmic transport;nucleoporin 155 | transcript=eq;prot=eq; | - | 1 | No |
| AT2G01690 | ath | ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Protein of unknown function DUF3434 (InterPro:IPR021841), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;ARM repeat superfamily protein | transcript=eq;prot=eq; | - | 2 | No |
| BD1G69510 | bdi | pid=Bradi1g69510.1;tid=Bradi1g69510.1;GeneName=Bradi1g69510;transcript=eq;prot=eq | - | Bd1 | No | |
| BD1G69520 | bdi | protein serine/threonine phosphatase activity (Blast2GO) | pid=Bradi1g69520.1;tid=Bradi1g69520.1;GeneName=Bradi1g69520;transcript=eq;prot=eq | + | Bd1 | No |
| CP00002G01840 | cpa | name=evm.TU.supercontig_2.184;pid=evm.TU.supercontig_2.184;prot=eq;transcript=eq | - | supercontig_2 | No | |
| CP00002G01850 | cpa | name=evm.TU.supercontig_2.185;pid=evm.TU.supercontig_2.185;prot=eq;transcript=eq | + | supercontig_2 | No | |
| CR01G12950 | cre | name=Chlre2_kg.scaffold_45000127;pid=152465;prot=eq;tid=152465;transcript=eq | - | chromosome_1 | No | |
| CR09G01770 | cre | name=estExt_fgenesh2_pg.C_220139;pid=191024;prot=eq;tid=191024;transcript=eq | + | chromosome_9 | No | |
| FV0G07840 | fve | Nuclear pore complex protein Nup155 (probable) | transcript=eq;prot=eq;pid=gene06257 | + | scf0513158 | No |
| FV0G07850 | fve | Protein VAC14 homolog (probable) | transcript=eq;prot=eq;pid=gene06258 | + | scf0513158 | No |
| FV0G19820 | fve | Probable nucleoporin C890.06 | transcript=eq;prot=eq;pid=gene05805 | + | scf0513160 | No |
| GM02G09340 | gma | 02 | pid=16247503;transcript=eq;prot=eq;name=Glyma02g09340.1 | - | Gm02 | No |
| GM05G34600 | gma | 05 | pid=16260688;transcript=eq;prot=eq;name=Glyma05g34600.1 | + | Gm05 | No |
| GM05G34610 | gma | 05 | pid=16260689;transcript=eq;prot=eq;name=Glyma05g34610.1 | + | Gm05 | No |
| GM07G26030 | gma | 07 | pid=16267998;transcript=eq;prot=eq;name=Glyma07g26030.1 | - | Gm07 | No |