Gene family  

Sub-families
ORTHO002358 (32 genes in 23 species)
ORTHO009528 (20 genes in 17 species)
ORTHO016254 (9 genes in 7 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (5 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (15 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (2 genes)



The gene family HOM001502 has 78 genes in 24 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 78 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G13540 aly name=scaffold_101437.1;pid=888643;prot=eq;tid=920156 - scaffold_1 No
AL5G05310 aly name=fgenesh2_kg.5__422__AT3G26640.1;pid=484430;prot=eq;tid=484430 + scaffold_5 No
AL6G24590 aly name=fgenesh2_kg.6__2449__AT5G24520.2;pid=489315;prot=eq;tid=489315 - scaffold_6 No
AT1G12910 ath Encodes a protein with similarity to the petunia WD repeat protein an11.;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; - 1 No
AT3G26640 ath LIGHT-REGULATED WD 2 (LWD2); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G12910.1); Has 5639 Blast hits to 5196 proteins in 384 species: Archae - 6; Bacteria - 320; Metazoa - 2319; Fungi - 1389; Plants - 885; Viruses - 0; Other Eukaryotes - 720 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; + 3 No
AT5G24520 ath Required for the accumulation of purple anthocyanins in leaves and stems. Involved in trichome and root hair development. Controls epidermal cell fate specification. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Based on clonal analysis and other methonds TTG1 has been shown to act non-cell autonomously and to move via plasmodesmata between cells.Localization and levels of TTG1 affect patterning of leaf trichomes.;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; - 5 No
BD3G44580 bdi pid=Bradi3g44580.1;tid=Bradi3g44580.1;GeneName=Bradi3g44580;transcript=eq;prot=eq - Bd3 No
BD3G51820 bdi pid=Bradi3g51820.2;tid=Bradi3g51820.2;GeneName=Bradi3g51820;transcript=eq;prot=eq - Bd3 No
CP00003G01630 cpa name=evm.TU.supercontig_3.163;pid=evm.TU.supercontig_3.163;prot=eq;transcript=eq - supercontig_3 No
CR16G05390 cre name=pasa_Sanger_mRNA15578;pid=396924;prot=eq;tid=405907;transcript=eq - chromosome_16 No
FV6G31680 fve WD repeat-containing protein LWD1 (AtAN11-A) (similar to) transcript=eq;prot=eq;pid=gene15643 + LG6 No
FV6G52050 fve WD repeat-containing protein LWD1 (AtAN11-A) (similar to) transcript=eq;prot=eq;pid=gene01411 - LG6 No
FV7G34790 fve Protein TRANSPARENT TESTA GLABRA 1 (similar to) transcript=eq;prot=eq;pid=gene12450 + LG7 No
GM03G35580 gma 03 pid=16253438;transcript=eq;prot=eq;name=Glyma03g35580.1 - Gm03 No
GM04G40610 gma 04 pid=16257416;transcript=eq;prot=eq;name=Glyma04g40610.1 + Gm04 No
GM06G14180 gma 06 pid=16262904;transcript=eq;prot=eq;name=Glyma06g14180.1 - Gm06 No
GM16G04930 gma 16 pid=16301516;transcript=eq;prot=eq;name=Glyma16g04930.1 + Gm16 No
GM19G28250 gma 19 pid=16313058;transcript=eq;prot=eq;name=Glyma19g28250.1 - Gm19 No
LJ0G104560 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_033381;name=LjSGA_033381.1 + LjSGA_033381 No
LJ1G013140 lja prot=eq;transcript=eq;scaffold=CM0476;name=chr1.CM0476.340.nd - chr1 No
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