Gene family  

Sub-families
ORTHO005407 (26 genes in 21 species)
ORTHO006006 (25 genes in 20 species)
ORTHO011820 (16 genes in 16 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (3 genes)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (4 genes)



The gene family HOM001490 has 79 genes in 24 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 79 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G32520 aly name=fgenesh2_kg.1__3298__AT1G31010.1;pid=473344;prot=eq;tid=473344 - scaffold_1 No
AL1G41090 aly name=fgenesh2_kg.1__3867__AT1G47720.1;pid=473913;prot=eq;tid=473913 - scaffold_1 No
AL4G11380 aly name=Al_scaffold_0004_1107;pid=868944;prot=eq;tid=900457 - scaffold_4 No
AL7G22390 aly name=fgenesh2_kg.7__2305__AT4G20010.2;pid=492872;prot=eq;tid=492872 - scaffold_7 No
AL8G04590 aly name=fgenesh2_kg.8__318__AT5G44785.2;pid=494502;prot=eq;tid=494502 + scaffold_8 No
AT1G31010 ath organellar single-stranded DNA binding protein 4 (OSB4); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Primosome PriB/single-strand DNA-binding (InterPro:IPR000424); BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 9 (TAIR:AT4G20010.1); Has 227 Blast hits to 149 proteins in 27 species: Archae - 0; Bacteria - 22; Metazoa - 0; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).;organellar single-stranded DNA binding protein 4 transcript=eq;prot=eq; - 1 No
AT1G47720 ath Encodes an organellar single-strand DNA binding protein, located in mitochondria, controls the stoichiometry of alternative mitochondrial DNA forms generated by homologous recombination.;Primosome PriB/single-strand DNA-binding transcript=eq;prot=eq; - 1 No
AT4G20010 ath plastid transcriptionally active 9 (PTAC9); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plastid chromosome, nucleoid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Primosome PriB/single-strand DNA-binding (InterPro:IPR000424); BEST Arabidopsis thaliana protein match is: organellar single-stranded DNA binding protein 3 (TAIR:AT5G44785.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;plastid transcriptionally active 9 transcript=eq;prot=eq; + 4 No
AT5G44785 ath organellar single-stranded DNA binding protein 3 (OSB3); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Primosome PriB/single-strand DNA-binding (InterPro:IPR000424); BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 9 (TAIR:AT4G20010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;organellar single-stranded DNA binding protein 3 transcript=eq;prot=eq; - 5 No
BD1G14220 bdi single-stranded DNA binding (Blast2GO) pid=Bradi1g14220.1;tid=Bradi1g14220.1;GeneName=Bradi1g14220;transcript=eq;prot=eq + Bd1 No
BD1G14690 bdi pid=Bradi1g14690.1;tid=Bradi1g14690.1;GeneName=Bradi1g14690;transcript=eq;prot=eq + Bd1 No
BD2G60720 bdi single-stranded DNA binding (Blast2GO) pid=Bradi2g60720.1;tid=Bradi2g60720.1;GeneName=Bradi2g60720;transcript=eq;prot=eq - Bd2 No
CP00030G01130 cpa name=evm.TU.supercontig_30.113;pid=evm.TU.supercontig_30.113;prot=eq;transcript=eq - supercontig_30 No
CP00052G00890 cpa name=evm.TU.supercontig_52.90;pid=evm.TU.supercontig_52.90;prot=eq;transcript=eq - supercontig_52 No
CR12G00060 cre name=estExt_fgenesh2_kg.C_880003;pid=186002;prot=eq;tid=186002;transcript=eq + chromosome_12 No
CR12G00070 cre name=Chlre2_kg.scaffold_88000007;pid=154571;prot=eq;tid=154571;transcript=eq + chromosome_12 No
FV2G08000 fve Protein OSB1, mitochondrial, Precursor (probable) transcript=eq;prot=eq;pid=gene08190 + LG2 No
FV2G51990 fve Protein OSB1, mitochondrial, Precursor (probable) transcript=eq;prot=eq;pid=gene15043 - LG2 No
FV3G10450 fve Protein OSB3, chloroplastic/mitochondrial, Precursor (probable) transcript=eq;prot=eq;pid=gene20059 - LG3 No
GM01G00550 gma 01 pid=16242921;transcript=eq;prot=eq;name=Glyma01g00550.1 - Gm01 No
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