Gene family  

Sub-families
ORTHO019895 (6 genes in 5 species)
ORTHO020375 (6 genes in 5 species)
ORTHO020380 (6 genes in 3 species)
View all sub-families (9)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (6 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (16 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (4 genes)
mtr
Medicago truncatula (4 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (7 genes)



The gene family HOM001488 has 79 genes in 19 species (10 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 79 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G12000 aly name=fgenesh2_kg.3__1207__AT3G11600.1;pid=478506;prot=eq;tid=478506 + scaffold_3 No
AL6G05890 aly name=fgenesh2_kg.6__569__AT5G06270.1;pid=487435;prot=eq;tid=487435 + scaffold_6 No
AL6G21920 aly name=fgenesh2_kg.6__2211__AT5G22270.1;pid=489077;prot=eq;tid=489077 - scaffold_6 No
AT3G11600 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 3 No
AT5G06270 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). transcript=eq;prot=eq; + 5 No
AT5G22270 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits to 136 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 5 No
BD2G23990 bdi pid=Bradi2g23990.1;tid=Bradi2g23990.1;GeneName=Bradi2g23990;transcript=eq;prot=eq + Bd2 No
BD2G55820 bdi pid=Bradi2g55820.1;tid=Bradi2g55820.1;GeneName=Bradi2g55820;transcript=eq;prot=eq + Bd2 No
BD3G13007 bdi pid=Bradi3g13007.1;tid=Bradi3g13007.1;GeneName=Bradi3g13007;transcript=eq;prot=eq + Bd3 Yes
BD3G45060 bdi pid=Bradi3g45060.1;tid=Bradi3g45060.1;GeneName=Bradi3g45060;transcript=eq;prot=eq + Bd3 No
BD5G09550 bdi pid=Bradi5g09550.1;tid=Bradi5g09550.1;GeneName=Bradi5g09550;transcript=eq;prot=eq + Bd5 No
BD5G26660 bdi pid=Bradi5g26660.1;tid=Bradi5g26660.1;GeneName=Bradi5g26660;transcript=eq;prot=eq - Bd5 Yes
CP00195G00330 cpa name=evm.TU.supercontig_195.33;pid=evm.TU.supercontig_195.33;prot=eq;transcript=eq + supercontig_195 No
CP01114G00010 cpa name=evm.TU.supercontig_1114.1;pid=evm.TU.supercontig_1114.1;prot=eq;transcript=eq + supercontig_1114 Yes
FV0G42430 fve hypothetical protein transcript=eq;prot=eq;pid=gene05225 + scf0513155 Yes
FV4G19090 fve Putative ribonuclease H protein At1g65750 (probable) transcript=eq;prot=eq;pid=gene22972 - LG4 Yes
FV6G31150 fve Putative ribonuclease H protein At1g65750 (probable) transcript=eq;prot=eq;pid=gene15328 - LG6 No
GM02G36010 gma 02 pid=16249196;transcript=eq;prot=eq;name=Glyma02g36010.1 - Gm02 Yes
GM02G36050 gma 02 pid=16249200;transcript=eq;prot=eq;name=Glyma02g36050.1 - Gm02 No
GM03G35780 gma 03 pid=16253459;transcript=eq;prot=eq;name=Glyma03g35780.1 + Gm03 No
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