Gene family  

Sub-families
ORTHO002139 (33 genes in 22 species)
ORTHO003389 (29 genes in 22 species)
ORTHO028264 (4 genes in 1 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (9 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (8 genes)



The gene family HOM001479 has 79 genes in 24 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 4, showing 20 records out of 79 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G30920 aly name=fgenesh1_pm.C_scaffold_1002421;pid=313641;prot=eq;tid=313641 - scaffold_1 No
AL1G48650 aly name=scaffold_105186.1;pid=892392;prot=eq;tid=923905 + scaffold_1 No
AL3G09090 aly name=fgenesh2_kg.3__907__AT3G08980.1;pid=478206;prot=eq;tid=478206 + scaffold_3 No
AT1G23465 ath Peptidase S24/S26A/S26B/S26C family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B, conserved region (InterPro:IPR019759), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I (InterPro:IPR000223); BEST Arabidopsis thaliana protein match is: Peptidase S24/S26A/S26B/S26C family protein (TAIR:AT1G29960.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Peptidase S24/S26A/S26B/S26C family protein transcript=eq;prot=eq; + 1 No
AT1G29960 ath Peptidase S24/S26A/S26B/S26C family protein; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B/S26C, beta-ribbon domain (InterPro:IPR011056), Peptidase S24/S26A/S26B, conserved region (InterPro:IPR019759), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I (InterPro:IPR000223); BEST Arabidopsis thaliana protein match is: Peptidase S24/S26A/S26B/S26C family protein (TAIR:AT1G23465.1); Has 5579 Blast hits to 5574 proteins in 1487 species: Archae - 0; Bacteria - 4203; Metazoa - 246; Fungi - 240; Plants - 281; Viruses - 0; Other Eukaryotes - 609 (source: NCBI BLink).;Peptidase S24/S26A/S26B/S26C family protein transcript=eq;prot=eq; + 1 No
AT1G53530 ath Peptidase S24/S26A/S26B/S26C family protein; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B/S26C, beta-ribbon domain (InterPro:IPR011056), Peptidase S24/S26A/S26B, conserved region (InterPro:IPR019759), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I, conserved site (InterPro:IPR019758), Peptidase S26, conserved region (InterPro:IPR019533), Peptidase S26A, signal peptidase I (InterPro:IPR000223); BEST Arabidopsis thaliana protein match is: Peptidase S24/S26A/S26B/S26C family protein (TAIR:AT1G29960.1); Has 5097 Blast hits to 5089 proteins in 1522 species: Archae - 0; Bacteria - 3881; Metazoa - 248; Fungi - 243; Plants - 276; Viruses - 0; Other Eukaryotes - 449 (source: NCBI BLink).;Peptidase S24/S26A/S26B/S26C family protein transcript=eq;prot=eq; + 1 No
AT3G08980 ath Peptidase S24/S26A/S26B/S26C family protein; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B/S26C, beta-ribbon domain (InterPro:IPR011056), Peptidase S24/S26A/S26B, conserved region (InterPro:IPR019759), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I (InterPro:IPR000223); BEST Arabidopsis thaliana protein match is: Peptidase S24/S26A/S26B/S26C family protein (TAIR:AT1G53530.1); Has 4114 Blast hits to 4113 proteins in 1108 species: Archae - 0; Bacteria - 2962; Metazoa - 240; Fungi - 231; Plants - 274; Viruses - 0; Other Eukaryotes - 407 (source: NCBI BLink).;Peptidase S24/S26A/S26B/S26C family protein transcript=eq;prot=eq; + 3 No
BD1G75200 bdi pid=Bradi1g75200.1;tid=Bradi1g75200.1;GeneName=Bradi1g75200;transcript=eq;prot=eq - Bd1 No
BD4G13337 bdi pid=Bradi4g13337.1;tid=Bradi4g13337.1;GeneName=Bradi4g13337;transcript=eq;prot=eq + Bd4 No
BD5G00590 bdi endopeptidase activity, serine-type peptidase activity (Blast2GO) pid=Bradi5g00590.1;tid=Bradi5g00590.1;GeneName=Bradi5g00590;transcript=eq;prot=eq + Bd5 No
CP00001G03230 cpa name=evm.TU.supercontig_1.323;pid=evm.TU.supercontig_1.323;prot=eq;transcript=eq + supercontig_1 No
CP00163G00190 cpa name=evm.TU.supercontig_163.19;pid=evm.TU.supercontig_163.19;prot=eq;transcript=eq - supercontig_163 No
CP01272G00030 cpa name=evm.TU.supercontig_1272.3;pid=evm.TU.supercontig_1272.3;prot=eq;transcript=eq + supercontig_1272 No
CR01G05630 cre name=estExt_gwp_1W.C_10111;pid=136408;prot=eq;tid=136408;transcript=eq + chromosome_1 No
CR18G00540 cre name=OVA_estExt_fgenesh2_pg.C_410053;pid=196086;prot=eq;tid=196086;transcript=eq + scaffold_18 No
FV3G19870 fve Mitochondrial inner membrane protease subunit 1 (similar to) transcript=eq;prot=eq;pid=gene27142 + LG3 No
FV3G19890 fve Mitochondrial inner membrane protease subunit 1 (probable) transcript=eq;prot=eq;pid=gene27144 + LG3 No
FV6G10580 fve Mitochondrial inner membrane protease subunit 2 (probable) transcript=eq;prot=eq;pid=gene18860 + LG6 No
FV6G24790 fve Mitochondrial inner membrane protease subunit 2 (probable) transcript=eq;prot=eq;pid=gene15855 - LG6 No
GM07G18060 gma 07 pid=16267654;transcript=eq;prot=eq;name=Glyma07g18060.1 - Gm07 No
<< previous
1 | 2 | 3 | 4 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier