Gene family  

Sub-families
ORTHO005793 (25 genes in 21 species)
ORTHO009908 (19 genes in 16 species)
ORTHO022666 (5 genes in 5 species)
View all sub-families (9)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (11 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (4 genes)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (6 genes)



The gene family HOM001456 has 81 genes in 24 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 81 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G45060 aly name=fgenesh1_pm.C_scaffold_1003227;pid=314447;prot=eq;tid=314447 - scaffold_1 No
AL4G30540 aly name=Al_scaffold_0004_2967;pid=870804;prot=eq;tid=902317 + scaffold_4 No
AL5G29730 aly name=fgenesh2_kg.5__2382__AT3G59220.1;pid=486390;prot=eq;tid=486390 + scaffold_5 No
AL5G29760 aly name=fgenesh1_pm.C_scaffold_5001945;pid=324401;prot=eq;tid=324401 + scaffold_5 No
AT1G50590 ath RmlC-like cupins superfamily protein; CONTAINS InterPro DOMAIN/s: Pirin, C-terminal (InterPro:IPR008778), Pirin (InterPro:IPR012093), Cupin, RmlC-type (InterPro:IPR011051), Pirin, N-terminal (InterPro:IPR003829); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT2G43120.1); Has 7420 Blast hits to 7420 proteins in 1472 species: Archae - 66; Bacteria - 4684; Metazoa - 72; Fungi - 219; Plants - 125; Viruses - 0; Other Eukaryotes - 2254 (source: NCBI BLink).;RmlC-like cupins superfamily protein transcript=eq;prot=eq; - 1 No
AT2G43120 ath RmlC-like cupins superfamily protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: stem, flower; CONTAINS InterPro DOMAIN/s: Pirin, C-terminal (InterPro:IPR008778), Pirin (InterPro:IPR012093), Cupin, RmlC-type (InterPro:IPR011051), Pirin, N-terminal (InterPro:IPR003829); BEST Arabidopsis thaliana protein match is: pirin (TAIR:AT3G59220.1); Has 7357 Blast hits to 7357 proteins in 1454 species: Archae - 66; Bacteria - 4603; Metazoa - 71; Fungi - 219; Plants - 125; Viruses - 0; Other Eukaryotes - 2273 (source: NCBI BLink).;RmlC-like cupins superfamily protein transcript=eq;prot=eq; + 2 No
AT3G59220 ath encodes a cupin-domain containing protein that is similar to pirins which interact with a CCAAT box binding transcription factor. The protein interacts with GPA1 (G protein alpha-subunit) in vitro. Mutants in the gene are affected in germination and early seedling development.;pirin transcript=eq;prot=eq; + 3 No
AT3G59260 ath pirin, putative; CONTAINS InterPro DOMAIN/s: Pirin, C-terminal (InterPro:IPR008778), Pirin (InterPro:IPR012093), Cupin, RmlC-type (InterPro:IPR011051), Pirin, N-terminal (InterPro:IPR003829); BEST Arabidopsis thaliana protein match is: pirin (TAIR:AT3G59220.1); Has 7341 Blast hits to 7341 proteins in 1468 species: Archae - 68; Bacteria - 4652; Metazoa - 72; Fungi - 217; Plants - 124; Viruses - 0; Other Eukaryotes - 2208 (source: NCBI BLink).;pirin, putative transcript=eq;prot=eq; + 3 No
BD1G01870 bdi pid=Bradi1g01870.1;tid=Bradi1g01870.1;GeneName=Bradi1g01870;transcript=eq;prot=eq + Bd1 No
BD3G21730 bdi pid=Bradi3g21730.1;tid=Bradi3g21730.1;GeneName=Bradi3g21730;transcript=eq;prot=eq - Bd3 No
BD4G33540 bdi pid=Bradi4g33540.1;tid=Bradi4g33540.1;GeneName=Bradi4g33540;transcript=eq;prot=eq + Bd4 No
CP00012G02130 cpa name=evm.TU.supercontig_12.213;pid=evm.TU.supercontig_12.213;prot=eq;transcript=eq - supercontig_12 No
CP00090G00510 cpa name=evm.TU.supercontig_90.51;pid=evm.TU.supercontig_90.51;prot=eq;transcript=eq + supercontig_90 No
CR01G13650 cre name=au.g2284_t1;pid=283816;prot=eq;tid=283823;transcript=eq - chromosome_1 No
CR02G10700 cre name=au.g9258_t1;pid=291298;prot=eq;tid=291305;transcript=eq + chromosome_2 No
FV3G26600 fve Pirin-like protein (putative) transcript=eq;prot=eq;pid=gene03512 + LG3 No
FV4G09320 fve Pirin-like protein (putative) transcript=eq;prot=eq;pid=gene22488 + LG4 No
GM02G46600 gma 02 pid=16250418;transcript=eq;prot=eq;name=Glyma02g46600.1 + Gm02 No
GM08G43660 gma 08 pid=16273725;transcript=eq;prot=eq;name=Glyma08g43660.1 + Gm08 No
GM08G47620 gma 08 pid=16274179;transcript=eq;prot=eq;name=Glyma08g47620.1 - Gm08 No
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