Gene family 
- Id
- HOM001456
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO005793 (25 genes in 21 species)
ORTHO009908 (19 genes in 16 species)
ORTHO022666 (5 genes in 5 species)
View all sub-families (9)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (4 genes)
- ath
- Arabidopsis thaliana (4 genes)
- bdi
- Brachypodium distachyon (3 genes)
- cpa
- Carica papaya (2 genes)
- cre
- Chlamydomonas reinhardtii (2 genes)
- fve
- Fragaria vesca (2 genes)
- gma
- Glycine max (6 genes)
- lja
- Lotus japonicus (3 genes)
- mdo
- Malus domestica (11 genes)
- mes
- Manihot esculenta (4 genes)
- mrcc299
- Micromonas sp. RCC299 (4 genes)
- mtr
- Medicago truncatula (2 genes)
- olu
- Ostreococcus lucimarinus (2 genes)
- osa
- Oryza sativa ssp. japonica (3 genes)
- osaindica
- Oryza sativa ssp. indica (5 genes)
- ota
- Ostreococcus tauri (2 genes)
- ppa
- Physcomitrella patens (3 genes)
- ptr
- Populus trichocarpa (2 genes)
- rco
- Ricinus communis (2 genes)
- sbi
- Sorghum bicolor (2 genes)
- tca
- Theobroma cacao (2 genes)
- vca
- Volvox carteri (2 genes)
- vvi
- Vitis vinifera (3 genes)
- zma
- Zea mays (6 genes)
The gene family HOM001456 has 81 genes in 24 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM001456
Page 1 of 5, showing 20 records out of 81 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G45060 | aly | name=fgenesh1_pm.C_scaffold_1003227;pid=314447;prot=eq;tid=314447 | - | scaffold_1 | No | |
| AL4G30540 | aly | name=Al_scaffold_0004_2967;pid=870804;prot=eq;tid=902317 | + | scaffold_4 | No | |
| AL5G29730 | aly | name=fgenesh2_kg.5__2382__AT3G59220.1;pid=486390;prot=eq;tid=486390 | + | scaffold_5 | No | |
| AL5G29760 | aly | name=fgenesh1_pm.C_scaffold_5001945;pid=324401;prot=eq;tid=324401 | + | scaffold_5 | No | |
| AT1G50590 | ath | RmlC-like cupins superfamily protein; CONTAINS InterPro DOMAIN/s: Pirin, C-terminal (InterPro:IPR008778), Pirin (InterPro:IPR012093), Cupin, RmlC-type (InterPro:IPR011051), Pirin, N-terminal (InterPro:IPR003829); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT2G43120.1); Has 7420 Blast hits to 7420 proteins in 1472 species: Archae - 66; Bacteria - 4684; Metazoa - 72; Fungi - 219; Plants - 125; Viruses - 0; Other Eukaryotes - 2254 (source: NCBI BLink).;RmlC-like cupins superfamily protein | transcript=eq;prot=eq; | - | 1 | No |
| AT2G43120 | ath | RmlC-like cupins superfamily protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: stem, flower; CONTAINS InterPro DOMAIN/s: Pirin, C-terminal (InterPro:IPR008778), Pirin (InterPro:IPR012093), Cupin, RmlC-type (InterPro:IPR011051), Pirin, N-terminal (InterPro:IPR003829); BEST Arabidopsis thaliana protein match is: pirin (TAIR:AT3G59220.1); Has 7357 Blast hits to 7357 proteins in 1454 species: Archae - 66; Bacteria - 4603; Metazoa - 71; Fungi - 219; Plants - 125; Viruses - 0; Other Eukaryotes - 2273 (source: NCBI BLink).;RmlC-like cupins superfamily protein | transcript=eq;prot=eq; | + | 2 | No |
| AT3G59220 | ath | encodes a cupin-domain containing protein that is similar to pirins which interact with a CCAAT box binding transcription factor. The protein interacts with GPA1 (G protein alpha-subunit) in vitro. Mutants in the gene are affected in germination and early seedling development.;pirin | transcript=eq;prot=eq; | + | 3 | No |
| AT3G59260 | ath | pirin, putative; CONTAINS InterPro DOMAIN/s: Pirin, C-terminal (InterPro:IPR008778), Pirin (InterPro:IPR012093), Cupin, RmlC-type (InterPro:IPR011051), Pirin, N-terminal (InterPro:IPR003829); BEST Arabidopsis thaliana protein match is: pirin (TAIR:AT3G59220.1); Has 7341 Blast hits to 7341 proteins in 1468 species: Archae - 68; Bacteria - 4652; Metazoa - 72; Fungi - 217; Plants - 124; Viruses - 0; Other Eukaryotes - 2208 (source: NCBI BLink).;pirin, putative | transcript=eq;prot=eq; | + | 3 | No |
| BD1G01870 | bdi | pid=Bradi1g01870.1;tid=Bradi1g01870.1;GeneName=Bradi1g01870;transcript=eq;prot=eq | + | Bd1 | No | |
| BD3G21730 | bdi | pid=Bradi3g21730.1;tid=Bradi3g21730.1;GeneName=Bradi3g21730;transcript=eq;prot=eq | - | Bd3 | No | |
| BD4G33540 | bdi | pid=Bradi4g33540.1;tid=Bradi4g33540.1;GeneName=Bradi4g33540;transcript=eq;prot=eq | + | Bd4 | No | |
| CP00012G02130 | cpa | name=evm.TU.supercontig_12.213;pid=evm.TU.supercontig_12.213;prot=eq;transcript=eq | - | supercontig_12 | No | |
| CP00090G00510 | cpa | name=evm.TU.supercontig_90.51;pid=evm.TU.supercontig_90.51;prot=eq;transcript=eq | + | supercontig_90 | No | |
| CR01G13650 | cre | name=au.g2284_t1;pid=283816;prot=eq;tid=283823;transcript=eq | - | chromosome_1 | No | |
| CR02G10700 | cre | name=au.g9258_t1;pid=291298;prot=eq;tid=291305;transcript=eq | + | chromosome_2 | No | |
| FV3G26600 | fve | Pirin-like protein (putative) | transcript=eq;prot=eq;pid=gene03512 | + | LG3 | No |
| FV4G09320 | fve | Pirin-like protein (putative) | transcript=eq;prot=eq;pid=gene22488 | + | LG4 | No |
| GM02G46600 | gma | 02 | pid=16250418;transcript=eq;prot=eq;name=Glyma02g46600.1 | + | Gm02 | No |
| GM08G43660 | gma | 08 | pid=16273725;transcript=eq;prot=eq;name=Glyma08g43660.1 | + | Gm08 | No |
| GM08G47620 | gma | 08 | pid=16274179;transcript=eq;prot=eq;name=Glyma08g47620.1 | - | Gm08 | No |